Zlin001337.1
Basic Information
- Insect
- Zaprionus lineosus
- Gene Symbol
- lrrfip2
- Assembly
- GCA_035044505.1
- Location
- JAWNNX010000042.1:51333-54984[-]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2.9e-109 5.8e-105 351.0 28.9 1 299 30 316 30 317 0.99 2 2 0.083 1.7e+03 -1.8 2.4 136 152 352 368 320 390 0.47
Sequence Information
- Coding Sequence
- ATGGATACTACTGGCGCAACCGGCCGTCGACGAAGCAACATGTTCGTTAATGCTGAAGATAACGCATTGAATCAAATAACTAAAGAGGCTGAAGCACGTCTAGCAGCCAGACGGCAAGCTCGGGCTGAAGCTCGAGAAATCCGCATGAGGGAACTTGAGCGACAACAGAAAGAGCAAGAACATAATGCTGATCGTGCTTTTGACATGCACTGTGCTGGGGGTAATATAACTAACGAAAGTCTGTTATCTAATTCTACTCGTCTGTTAAATCTGACACGTTCAACTACTTCGCGACGTAGTAGTGAGGATTCATTAGAGGATGAAGGCCGCAGTTTTCGTGACATTAAACAGGAACTCAAAgAGGTAGACGAACGTTTTCGAAAAGCTATGATAACAAATGCCCAATTGGACAACGATCGTTCATCCTTAACTTATGAAGTGAAACTACTTAAGGATAAAAGTGAAACACTGCAAGAGACTTTTGCCCAAATGCAGCGtgaatttaaaagcaaagttCATGATTGTAATGCTCTACAACGAAACTTGGATCGCACAACACTTGAATTGGACTTAATAAAGGGCCAATTAAATGAACGTGATGCCCTTCTTACTGAGCATGGCCTTGTGATTGTTGTCATTGAAAATGATGAAGGTACTGATGCAAAACGGGCATTagttaaaatggaaaatgcgaaTATTTTGGGGACAATGCAGGGCTCACTTGATACTAGATTGCAGAAATTATCTGATGAGAATCAACGGCTTCTTattgaaatacaaaaacttAACGAACAGTTGCATTTCTTAAAAACTGAAGGCAGAAGAGGATGTCACAATGCATTCAATGGGTCTTTAGAATATGAAAACGATTATGAAGCTCAAAGAGAAGCTAATAAAACCATATCCGACTACAGATACAAGCTGCAAAAGGCTGAACAGGAAATCGCTAACCTCCAAGCCAACTTAGCCCGTACGGAAACTCAAATAATACGTTATAGAAGCACTGCAGAAGCTGCAGAAAAAGCAGAGGTAGAGTTAAAACTGGAAAGGCGGAAACTGCAACGTGAGAATAGAGAAGCTTTGGAACGTTTAGAAGAAGTGGAGACGGCAAATAACCATTTGCTTAAACGACTtgataaacttaaaaatgctAAAAGTATAATTTTGAAAGATTTATGA
- Protein Sequence
- MDTTGATGRRRSNMFVNAEDNALNQITKEAEARLAARRQARAEAREIRMRELERQQKEQEHNADRAFDMHCAGGNITNESLLSNSTRLLNLTRSTTSRRSSEDSLEDEGRSFRDIKQELKEVDERFRKAMITNAQLDNDRSSLTYEVKLLKDKSETLQETFAQMQREFKSKVHDCNALQRNLDRTTLELDLIKGQLNERDALLTEHGLVIVVIENDEGTDAKRALVKMENANILGTMQGSLDTRLQKLSDENQRLLIEIQKLNEQLHFLKTEGRRGCHNAFNGSLEYENDYEAQREANKTISDYRYKLQKAEQEIANLQANLARTETQIIRYRSTAEAAEKAEVELKLERRKLQRENREALERLEEVETANNHLLKRLDKLKNAKSIILKDL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -