Zlin017043.1
Basic Information
- Insect
- Zaprionus lineosus
- Gene Symbol
- -
- Assembly
- GCA_035044505.1
- Location
- JAWNNX010000694.1:751289-752881[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 6e-17 1.2e-13 50.7 0.0 2 45 361 404 360 404 0.95 2 3 0.016 32 4.5 0.0 27 37 433 443 411 448 0.84 3 3 5.1e-19 1e-15 57.3 0.0 2 42 470 510 469 512 0.95
Sequence Information
- Coding Sequence
- ATGGGTCACTCATCCACAATAATGGATATTCAACGCGTATTGCAGAGCCAGCAGAGCAACAACCAAAGCTGTGAGGTTTTACTAGTTGCTAAAGATGGTGTTAGTGTACGAGCCCATTTATTTGTACTGAGTACGTGCAGTGATCTGATGCGCAATCTATTAGTTGATTTACCAGTTGGTCAGGAGGCAACTGTTATCCTCCCCGATATACGGGGTGAACTATTAGAAAGCATgttatcttttatttacatGGGTGAAACTAGCTTACCTTCTGCCCTGCTAACAGAATTTTTGGAAGCTATAAACTTGTTGGGCATAAAATCTGCTATTAGTTTTGAAACAAATTCCGCAGCCCTGACAACTGCAAACGTTGTAAGCGACGCCATGGCTTTAGAAGCGGCAAAGTCAATAAGCGGCTTGCAAATTGCAAGCTCAGCTCTTATGGgtgaagaagatgatgatgatgacacaACCAATGTAGTTGGTAAACTGGAAGTAGGAAACACTGTTCTCTCAGATCCTCAACAATCGCAGGATCAGGAGGGAAGATCGCTTGAATTTTTAAGTGTTTATAGCGATCAACCAAAAATAACTTATTCCATTGAACATATGGACGGAACAACAAGTGGAAATCAGTATATATTAACCGAAAATACAGGCACTTTTACCATAACACAATCAACAGCGCCAGTGACTAAAATAGAAGAATCTGATGGCTCGGCTGGGTCCGGAGGAGTAATGGTGGATGACGAAGCAGATCTAGACGATGATCACGATGAATCTGACACTCACTTATTGGAAGAGGAATTCGTTGCTTCAGCAGGACCGTTAATTGAAATGGGTACAGATGTAGATGCGGATGTAGATATGACCGAAGATGCTATGCttgatggagatggagaggatgacgatgacgacgagcAATTGTTAAATGTGAAGCCACGGAAGCCTCAGATACACTTAAAAAGGCTTAAATCCACAGAACGACATCGTACAACATGCTCTAAAACTACAAAGAAGTCGTTAATGaaacagcatcaacaataCGCAGcacttaaaaaagaaataaaggaaGATTTAAATGATGCCTTAGATTTAGCCGCTGAGGCAGTACTTCATGAGGGACTAAGTCTTCAAAAGGCTGCGGATCGATATGACATATCCAAAACTGTTTTATGGCGACGTGTGCGTGCCAATCCTGCTTACATGAGAATTAAACGAGAAAAGCCGTCACTATCAGAGGCTTATGAACGTCTGAGAAACGGAGATTCACTTAAGAGTATTAGCCAAGATCTGAATATACCTATGTCGACACTGCACCGACATAAAGTTCGACTTGCGGCGCAAGGTCGTTTACCCGACTTTGTTTCTTGTCGACGTCGGGATAGCACACCAAAAGACGAGCTACGCGACAAACTGGCAAAGGCAGTGCATGCATGTGTCAACCAGGGCATGTCACAAAATCATGCAGCAAATCTGTTTGAAATACCCAAGAGTACCCTCTGGCGACATTTACAGCGTCGTGTGACTGAAGCAGATCGAAAAGTCAAGGAGGAacaagatgatgatgatgaagatgatacCCTTAATTAG
- Protein Sequence
- MGHSSTIMDIQRVLQSQQSNNQSCEVLLVAKDGVSVRAHLFVLSTCSDLMRNLLVDLPVGQEATVILPDIRGELLESMLSFIYMGETSLPSALLTEFLEAINLLGIKSAISFETNSAALTTANVVSDAMALEAAKSISGLQIASSALMGEEDDDDDTTNVVGKLEVGNTVLSDPQQSQDQEGRSLEFLSVYSDQPKITYSIEHMDGTTSGNQYILTENTGTFTITQSTAPVTKIEESDGSAGSGGVMVDDEADLDDDHDESDTHLLEEEFVASAGPLIEMGTDVDADVDMTEDAMLDGDGEDDDDDEQLLNVKPRKPQIHLKRLKSTERHRTTCSKTTKKSLMKQHQQYAALKKEIKEDLNDALDLAAEAVLHEGLSLQKAADRYDISKTVLWRRVRANPAYMRIKREKPSLSEAYERLRNGDSLKSISQDLNIPMSTLHRHKVRLAAQGRLPDFVSCRRRDSTPKDELRDKLAKAVHACVNQGMSQNHAANLFEIPKSTLWRHLQRRVTEADRKVKEEQDDDDEDDTLN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01570162;
- 90% Identity
- iTF_01556224;
- 80% Identity
- iTF_01556224;