Zind006872.1
Basic Information
- Insect
- Zaprionus indianus
- Gene Symbol
- RREB1
- Assembly
- GCA_018904595.1
- Location
- JAEIHA010000344.1:4580816-4597886[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.018 1.3 9.5 0.8 1 21 111 131 111 133 0.93 2 11 0.0033 0.24 11.8 0.1 1 19 143 161 143 167 0.93 3 11 0.53 38 4.9 2.9 2 19 253 270 253 273 0.94 4 11 0.0045 0.32 11.4 0.1 1 23 455 477 455 477 0.97 5 11 6.2e-06 0.00044 20.4 0.7 1 23 487 509 487 509 0.99 6 11 0.00042 0.03 14.7 2.0 1 23 515 538 515 538 0.97 7 11 4.4e-05 0.0031 17.8 0.3 2 23 793 814 792 814 0.97 8 11 0.073 5.2 7.6 6.3 1 23 820 843 820 843 0.97 9 11 4.4 3.1e+02 2.0 4.3 1 23 971 994 971 994 0.87 10 11 0.0043 0.3 11.5 0.5 3 23 1048 1068 1046 1068 0.96 11 11 0.00067 0.048 14.0 4.8 1 23 1074 1096 1074 1096 0.99
Sequence Information
- Coding Sequence
- ATGTGTCGCAGGTGGGGAAGAGAGAGGGGTGGAGGGGGAGTGGTTGGTAGTGGGCTGAACTCTTCGCTGCGCAAGAAGTTCCGCCTGAATCGCAGCAATGTCGCTGGCGAATTATCCGAATCGGGCTTTGTCGATGGCAGCGCCAACAGCGGCTTTCTGCTCGGCAACAGCAGCGCTGCAGTCGCTGCGCAGTCGGCGTCAGCATCGGCCTCGTCAGCACTGCTGCAGGCATCGTCGAGCAGCTCTGGCGGCTCATCGCCGCAACAGGGCGCCGGCCTGTGCCTGTCGAGCGCCGAGTCTGGCATCGGAGCTGGGGAGGAACACATGAAGTATCTGTGCCCCATCTGCGAGGTCGTCTCGGCTACCCCACACGAGTTCACCAATCACATAAGGTGCCACAACTATGCGAACGGCGATACCGAGAACTTCACCTGCCGCATCTGCTCGAAGGTTCTCTCATCAGCCTCATCGCTGGACAGACACGGTGAGGAGGATGAGCACATCACCAGCACACCCGATGTGGCAACGCTGCTTGCCTCGGGCAACACGACACCCGAGCACGAGCACGACGATCACGACGATGATCACGCCCACTCCGCCTCACACTCACTGGCCTCGACACCCTCGCCCACACCTCCGCCCCCTGCTGTCGCCTGCCTGACCTGTCCTGCCTGCCCCGCCCACCTGGCAGAGCCCTTCGAGACGTTGCCAGCACTGTGGCAGCATCTGGATGCAGAGCACGCCGATATACCCGCCAAGTGCCGCGACTGCGAGGTGATCTTCGCCAGCCATCGCCAGCTGCAGGTGCACAACTGTCACCAGCAACTGCGCCGTCGCCACCTGCTGCCTCCGCTGCTGGGCAACAGTTCCTCGCCCAAGCAGTTGCGGCAGGAGGAGGACGACGACGATGAGGATGCGGAGTACGATGAGGAGGAGGACGAGGATGCACAGCAGCAACGAGTCAAGCAGGAGGAGGATGAGGAGGACGTGGAGCAGCAGCAGGCTGATGACTTCTTTCAGCAATTTCAATATCTCAAGGGCAAAGCAGCGCAACATGCTGCCGCTGCCACCGCCGCTGCTGCTGCACATGCTCATGCCGCGGCCGCTGCACACGCTGCAGCTGTGGCTGCCTCCCAGCTACCGTCGCCCATCAAGCACGAGCCCATGGAGCGAGGCGAGCCTTCGCGGGATCTTGCCGACATACAGAGCATCCTCAATATGACCAGCTCCAGCTGCACATCGAGTTTCCTGCGCAACTTTGAGCAATCGGTGAACACGCCCTGCTCCAGCCGCGATGGGGACGGGGAGGAGGCACAGGATGCTTTCACCAGTGAGTTCCGTCGCATGAAGCTGCGTGGCGAGTTCCCCTGCAAGCTCTGCTCGGCAGTGTTTCCCAATCTGCGTGCCCTCAAGGGACACAATCGGGTGCATCTGGCCGCAGTGGGTGCAGCGGGTCCGTTCCGCTGCAACATGTGTCCCTATGCGGTGTGCGACAAGGCGGCGCTGGTGCGGCACATGCGCACCCACAACGGCGATCGGCCCTACGAGTGCGCCGTCTGCAACTATGCTTTCACCACCAAGGCCAACTGTGAGCGCCATCTGCGCAATCGTCACGGCAAGACCAGCAGGGACGAGGTGAAGCGGGCGATCATCTACCATCCGGCTGAGGATGCCTCCTCGCAGGAGCAGGAGCAGCACAAGGCGGGCACAGATCTGGATCTGAGCTATCGCTCGCTTACTCCTCCCCCTGCAACTGTTGCGCCTGCTGGCAACTCACTGCCCTTGTCGCTGGGCGTGCCCATGCCTGCGGCTGCCCCCGCCGGTCCAGTCAAGATGGTCATCAAGAATGGCGTGCTGATGCCCAAGCAGAAGCAGCGTCGCTACCGCACCGAGCAGCCACTGCCACGCAGCTCCACGCCCATTAAGCTGGCCAAGCAAGTGGCTGACAACATCCTCGAACAAGCCATCAAGGCAGGCGCAGCTCCAGCAGAGTCCAGTTCCCCCTCCTCGGCCTCCGCAGCCCCCACAGCCATGAAGTCAATGATAGCACAAGCAGATGCTGTGGCTAAGTCCCTCAAGGATGTGGCCAGTTCACCCTTCAAGGATGACTCGCAGGATCTGGTGCCGGTGGCCAAGCTGGTGGACAATGCCACCAGCAATCAGTCGATGTCCTCGTTCAACAACTACTTTCGTCCCAGCGATGTGGTCAACCACATGGAGCAGAGCGACGAGGAGGGACTAGTCGCCTCGGGCAGTGCCAGCGAGAGCAACAACTCGGGCACCGAGGACGTGGCTGCCTCTGCCACGGCCAACGGGGGCTCCTCCTCGAGTGACACCAAGAAGAAGTCCGCTTACAGTCTGGCACCCAATCGGGTCAGTTGTCCCTACTGCCAGCGCATGTTCCCCTGGAGCAGCTCGCTGCGTCGCCACATACTCACCCACACCGGACAGAAGCCCTTCAAGTGCTCGCACTGTCCACTGCTCTTCACCACCAAGTCCAATTGCGATCGTCATCTGCTGCGCAAGCACGGCAACGTCGAGTCCGCCATGTCGGTCTATGTGCCCGCAGAGGATGTGCGTGAGCCCATTCCGGTGCCCAAGTCTGTGGAGGAGATCGAGCTGGAGGAGCAGCGTCGGCGACGTCGTGCCCTCGAGGAGGAACGTGAGCGGGAGAGGGAACGCGAGCGGGAGCTAAAGCGTGAGCGTGAACTAGAATTGGAGCGCGAGCGTGAGCTGGAACTGGAGCGGGAGAGGGAGCGAGAGCAGCTCATACAGCAGTTTGCAGCAGCGGCCCAGCAAGTGGCAGCGGCGGCAGCAGCAGCCGCAGCAGCACAAGCCGGAGCTGCAGGCGGTGCATCCTCTCCAGCACCGGGGGGTGCAGTCGATGCCCAGCTGGGCTCGGATCTGCCCTACAAGTGTCATCTGTGCGAGTTCTCCTTTGGCGAGCGGATGCAGTGCCTCGAGCACATCAAGCAACAGCACGCACAGGAGTTTGCCCTGCTGCTGGCCAAGGGTGCCATCGAAACGGAGCCAGCTACGCAGGCCGCTGCTGCTGCAGCACCTCCCTCTTCGGCTGCCCACTCGGATGAGGAGGGTGGCAAAGGGGGCAAGTACCCCGCGTACAGCAACCGCAAGGTGATCTGCGCCTTCTGCGTGCGTCGCTTCTGGTCCACTGAGGATCTGCGGCGTCACATGCGCACGCACTCGGGGGAGAGACCCTTCCAGTGCGAGATCTGCCTGCGCAAGTTCACCCTGAAGCATTCCATGCTGCGCCACATGAAGAAGCACAGCGGCGGAGGGCGTGGCAGTGGAGGCAGTCACAATGGCGATGCGGGTTGCCAATCCGATTGCTCAGATGATGAACACTTGGGTGCCACACCCCCGACCACGCCTACACCAACGCCCACACCCGATCAGGGCATACTGAACAAGCTGCTCTCCTCGGCGGATGAGGCAGCCAAGCTGCTCGGCGTGGATAAGTAA
- Protein Sequence
- MCRRWGRERGGGGVVGSGLNSSLRKKFRLNRSNVAGELSESGFVDGSANSGFLLGNSSAAVAAQSASASASSALLQASSSSSGGSSPQQGAGLCLSSAESGIGAGEEHMKYLCPICEVVSATPHEFTNHIRCHNYANGDTENFTCRICSKVLSSASSLDRHGEEDEHITSTPDVATLLASGNTTPEHEHDDHDDDHAHSASHSLASTPSPTPPPPAVACLTCPACPAHLAEPFETLPALWQHLDAEHADIPAKCRDCEVIFASHRQLQVHNCHQQLRRRHLLPPLLGNSSSPKQLRQEEDDDDEDAEYDEEEDEDAQQQRVKQEEDEEDVEQQQADDFFQQFQYLKGKAAQHAAAATAAAAAHAHAAAAAHAAAVAASQLPSPIKHEPMERGEPSRDLADIQSILNMTSSSCTSSFLRNFEQSVNTPCSSRDGDGEEAQDAFTSEFRRMKLRGEFPCKLCSAVFPNLRALKGHNRVHLAAVGAAGPFRCNMCPYAVCDKAALVRHMRTHNGDRPYECAVCNYAFTTKANCERHLRNRHGKTSRDEVKRAIIYHPAEDASSQEQEQHKAGTDLDLSYRSLTPPPATVAPAGNSLPLSLGVPMPAAAPAGPVKMVIKNGVLMPKQKQRRYRTEQPLPRSSTPIKLAKQVADNILEQAIKAGAAPAESSSPSSASAAPTAMKSMIAQADAVAKSLKDVASSPFKDDSQDLVPVAKLVDNATSNQSMSSFNNYFRPSDVVNHMEQSDEEGLVASGSASESNNSGTEDVAASATANGGSSSSDTKKKSAYSLAPNRVSCPYCQRMFPWSSSLRRHILTHTGQKPFKCSHCPLLFTTKSNCDRHLLRKHGNVESAMSVYVPAEDVREPIPVPKSVEEIELEEQRRRRRALEEERERERERERELKRERELELERERELELEREREREQLIQQFAAAAQQVAAAAAAAAAAQAGAAGGASSPAPGGAVDAQLGSDLPYKCHLCEFSFGERMQCLEHIKQQHAQEFALLLAKGAIETEPATQAAAAAAPPSSAAHSDEEGGKGGKYPAYSNRKVICAFCVRRFWSTEDLRRHMRTHSGERPFQCEICLRKFTLKHSMLRHMKKHSGGGRGSGGSHNGDAGCQSDCSDDEHLGATPPTTPTPTPTPDQGILNKLLSSADEAAKLLGVDK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01550530; iTF_01551246; iTF_01557782;
- 90% Identity
- -
- 80% Identity
- -