Basic Information

Insect: Zaprionus indianus
Gene Symbol: -
Assembly: GCA_018904595.1
Location: JAEIHA010000860.1:6664539-6666695[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 1.9e-06 0.00013 22.1 3.1 1 23 335 358 335 358 0.95

2 8 0.0037 0.26 11.7 0.9 1 21 366 386 366 387 0.95

3 8 6.6e-05 0.0047 17.2 3.9 1 23 394 417 394 417 0.97

4 8 1.8e-07 1.3e-05 25.3 2.3 1 23 423 445 423 445 0.97

5 8 0.00037 0.026 14.9 4.7 1 23 451 473 451 473 0.98

6 8 0.32 23 5.6 7.4 1 23 479 502 479 502 0.92

7 8 1.9e-05 0.0014 18.9 2.4 1 23 510 532 510 532 0.98

8 8 0.00055 0.039 14.3 3.2 1 23 538 562 538 562 0.92

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	1.9e-06	0.00013	22.1	3.1	1	23	335	358	335	358	0.95
2	8	0.0037	0.26	11.7	0.9	1	21	366	386	366	387	0.95
3	8	6.6e-05	0.0047	17.2	3.9	1	23	394	417	394	417	0.97
4	8	1.8e-07	1.3e-05	25.3	2.3	1	23	423	445	423	445	0.97
5	8	0.00037	0.026	14.9	4.7	1	23	451	473	451	473	0.98
6	8	0.32	23	5.6	7.4	1	23	479	502	479	502	0.92
7	8	1.9e-05	0.0014	18.9	2.4	1	23	510	532	510	532	0.98
8	8	0.00055	0.039	14.3	3.2	1	23	538	562	538	562	0.92

Sequence Information

Coding Sequence: ATGATCGCAACTAATAATGCAAACCGGAAAAAATCGTTGCGATTTGAGAAGGATGACAGGATGCGGCTTATAGATGCAGTCAGGACCAGACGGCTGCTCTGGGACAAGACACACAGTGAGCACAGTGATTTCGCGAGGGTTAAGTCAGCCTGGCAATCAGTGGGTCAGCAGTTGAACAGAGATCCAAATGAATGTAAGGTGGCTTGGCGATCATTGCGACAGAGTTATCGGTACCACTGTAAAGTTGCGTATAACCGCTTTAAATCTGACGAATATGATGAAGACGGCGAAATAGATCCATTAGAAACACCCGACATTCAATGGGAGTTTGCTAATGCAATGGCTTTCTTACAGGAGTTATCCAAGAAGAGGACGCAGCCGGAACCATTAAACGATGCGACTAACGAAAGTGCGGTGACAGAAGATTACACTGATGCGGAGTATTTGGAAATTATTGAACTAGACGATAATGATGCTGACATAGTCGACGATGATTGGGAGGAAGACAGTGAAAAGCATGAAATTAATGGACTAAGCGAGGTAATATGCAGAACATGTGGTCAACCATCAGATTCTTCAACATTACAGAATTTATTTCACTCTGATAATTACTTGATTTTGGAACAGATTACAATGATGACAGAGCTTACGCTAAAACCAGAAGAGGATCTTTCAAATTTCATCTGTGAACTCTGTCTACAAAAGCTAGAGATCGCTGTTGAATTTCGTAGAGTTTGCATTGAGGCACAAACACAGGGCATGATACAAGTACAAAGAAAAAAAGAAGAGGATGTAATGTATTTCAGGACGGAAAAAATAAACGACTCAAGTCTTATCGACGTGAGTGTTCAAGAAGACCGACTCGAAGACGTTGATCACTCTGATAACGATGACAGTTATGAGGATCTTAATCAAGATTATGAGCATCTTGATGAAGAAGTAGTACGATCACCATCACCAAAAAGTAGAAAAACTAAAACAATAGAGCAGACAAGTCAAAAATATCAATGTCATCAGTGTGGGTTGACATTTACAAGCCAAGATCTGCTTAAGATGCACATGCACGAGATACACGAAACGCAACTTCATACAAGATTTGTGTGCAGGCATTGTGGACACGACTTCAAGTACTCAGAGCCGCTTGTTGAGCACCTAAAGAGCATTGGAGCTAAATTTGACTACATGTGCGAGGATTGTGGGCAAAGGTTTTACAGCAGACATTTTCTACTGAAACATAAGAGACGCGTACATGGTCAGGCAACTGCATATATTTGCCACATTTGTGGCAAGAACTTTACCACGAGTTTCAATCTACGCAATCACATCGTACGACACGGGGGTACGCGACCTCACAAATGCAAACTGTGCAAGGCAGCCTTCTGCACCAAAGCCGAGTTAAATGGCCACAAGCGCACGCACGATAATGTGCGTCCATATCCATGTCGATATGGCTGCGGTAAATCCTTTCGGCACTGCAGCAATCGCAGTTGTCACGAGAGGGTGCATATGGATAGAAGCTTGCGCCCTTTTCAATGTGAATATTGCGACAAATCTTTTGTAACTCAAGGCGACTGCAGATCACATCAAATGGTGCATACTATGAGTCGTAATTTTAGCTGTGAAATTTGCGAACAAAGCTTTAAGCTGCAGAAACATTATCAGCAGCATCTGTTAACAAAGTCACATAAAAGGGCCGAGGCTCGCGCATCAACGATCAAGGAGAATAATGTGGAAGCATAG
Protein Sequence: MIATNNANRKKSLRFEKDDRMRLIDAVRTRRLLWDKTHSEHSDFARVKSAWQSVGQQLNRDPNECKVAWRSLRQSYRYHCKVAYNRFKSDEYDEDGEIDPLETPDIQWEFANAMAFLQELSKKRTQPEPLNDATNESAVTEDYTDAEYLEIIELDDNDADIVDDDWEEDSEKHEINGLSEVICRTCGQPSDSSTLQNLFHSDNYLILEQITMMTELTLKPEEDLSNFICELCLQKLEIAVEFRRVCIEAQTQGMIQVQRKKEEDVMYFRTEKINDSSLIDVSVQEDRLEDVDHSDNDDSYEDLNQDYEHLDEEVVRSPSPKSRKTKTIEQTSQKYQCHQCGLTFTSQDLLKMHMHEIHETQLHTRFVCRHCGHDFKYSEPLVEHLKSIGAKFDYMCEDCGQRFYSRHFLLKHKRRVHGQATAYICHICGKNFTTSFNLRNHIVRHGGTRPHKCKLCKAAFCTKAELNGHKRTHDNVRPYPCRYGCGKSFRHCSNRSCHERVHMDRSLRPFQCEYCDKSFVTQGDCRSHQMVHTMSRNFSCEICEQSFKLQKHYQQHLLTKSHKRAEARASTIKENNVEA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01549083;
90% Identity: iTF_01550497;
80% Identity: -