Zghe003607.1
Basic Information
- Insect
- Zaprionus ghesquierei
- Gene Symbol
- -
- Assembly
- GCA_018904095.1
- Location
- JAEIGP010000662.1:9204854-9205377[-]
Transcription Factor Domain
- TF Family
- zf-LITAF-like
- Domain
- zf-LITAF-like domain
- PFAM
- PF10601
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family display a conserved zinc ribbon structure [3] with the motif C-XX-C- separated from the more C-terminal HX-C(P)X-C-X4-G-R motif by a variable region of usually 25-30 (hydrophobic) residues. Although it belongs to one of the zinc finger's fold groups (zinc ribbon), this particular domain was first identified in LPS-induced tumour necrosis alpha factor (LITAF) which is produced in mammalian cells after being challenged with lipopolysaccharide (LPS)[2]. The hydrophobic region probably inserts into the membrane rather than traversing it. Such an insertion brings together the N- and C-terminal C-XX-C motifs to form a compact Zn2+-binding structure [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 1.1e-07 8.9e-05 22.4 17.9 3 69 76 147 74 148 0.78
Sequence Information
- Coding Sequence
- ATGGACAAGCAGACGCTACAGATCAGGTTGGTGCCGGCACAGAGTGCTGAGGATCGTGCACGGAATATCATAGCCAATGTGGTAGTTGTGGAGGGAGAACACACTGCACTGGTGCCCTACATCGATGACCATGAAGTGGTGGCCGAGAAAAAGACGCTGCTGACACAGTTGGAGGCAGAGCCTGAGGCGGCGCCTCGTCTACGCTACTATACACCAGGTCCATCCACCTACAAGCTGCTTTGCCCACTGTGCCGCGAGCGCAGCGAGGCAGCCGTCATGCGCGCAGCAGGCTGCAAGGATCTCAGCTGCTGTCTGAGTCTGCTCTCCTGCATCTTTCCCATCTTCTGGATCTGCTGCATCTGCACGTGGTGCGGCTGCAATCGTGAGTGGACCACCAAGGGCGTCTACTGCAGTCACTGTGGCGCCAAGGTTGGCATCCAGAACGCGTCCGACTAA
- Protein Sequence
- MDKQTLQIRLVPAQSAEDRARNIIANVVVVEGEHTALVPYIDDHEVVAEKKTLLTQLEAEPEAAPRLRYYTPGPSTYKLLCPLCRERSEAAVMRAAGCKDLSCCLSLLSCIFPIFWICCICTWCGCNREWTTKGVYCSHCGAKVGIQNASD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01549255; iTF_01554363; iTF_01552846; iTF_00472734; iTF_00472735; iTF_00554079; iTF_01551399; iTF_01552130; iTF_01550671; iTF_01557953; iTF_01558706; iTF_01557235; iTF_01560118; iTF_01555802;
- 90% Identity
- -
- 80% Identity
- -