Zghe013561.1
Basic Information
- Insect
- Zaprionus ghesquierei
- Gene Symbol
- ken1
- Assembly
- GCA_018904095.1
- Location
- JAEIGP010000850.1:2149583-2151778[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.0066 0.45 10.9 4.5 3 23 208 228 206 228 0.96 2 12 0.0014 0.099 13.0 0.1 1 23 234 259 234 259 0.93 3 12 0.007 0.48 10.8 0.2 3 23 268 291 266 291 0.93 4 12 0.015 1 9.8 1.4 3 23 305 325 304 325 0.97 5 12 9.4e-06 0.00064 19.9 0.6 1 23 332 354 332 354 0.98 6 12 0.0056 0.38 11.2 0.1 1 23 360 382 360 382 0.98 7 12 0.03 2 8.9 2.1 1 23 388 411 388 411 0.97 8 12 0.007 0.48 10.8 3.9 1 23 417 439 417 439 0.96 9 12 0.00085 0.058 13.7 2.9 2 23 446 467 445 467 0.96 10 12 8.1e-05 0.0055 16.9 1.6 1 23 567 590 567 590 0.95 11 12 0.011 0.73 10.3 0.7 1 19 596 614 596 618 0.95 12 12 4e-06 0.00028 21.0 1.0 1 23 624 646 624 646 0.98
Sequence Information
- Coding Sequence
- ATGAGCACAGTCACCACATGTTCTGTGGATTCAATATGTCGAGTTTGCTTAATTTATATCGATGGTAGTTCAGCATATGACCTGTTTTTACTGCCCGATCTCGCCAAGACCTTCACAGTTTGCACGTCCATGTTGGTGGAACCGAAAGATGGATATCCTAGGAGAATCTGTTCAAATTGTTTTGAAAGATTAAATGATCTACATGATTTTCAGAAGCTATGTGTGGCTTCTGTGCTTCGGTTTAAGCAAATGGTAGCCAGTGGTGTTTTCTGTCCAAATGACCCGTTTGAACCGTTGCCGGTGGAGGAGGTACTGGCCAAGGATGAGCAGCCCGACAATGATTACGATCCCCTGCTGAGTCACAAAATGGAGTTAATTGGCAATGAAGAAGATGTCTTCAAACTGCTGGAGAATGTAGATAAGGAAACGGATGATGTGGAGGAAGTGCAAAGCGAGTGCTCAACGGTAGACGGCAGTGAGGATGATGTGCCTTTGGCGCAGAGAATGTTTAATCAGCGTAGCGTAACTGATTCTGAATCTGGCAGTGAGAGGAAGCCCACAGCCAGCTCAACTCGCAAGCTAATCTCTGCATCGGAACGGCATTTTCGTCGGATTATTGCCTGCCAGATATGTCATCAGAAATTCAAGAAGAAAATCAACTATGACGAGCATATGAAACATCACAACGAACTATTACCCTATCAGTGTAACGATGAGAGCTGTAAGAAAGGATTCACTACGGCGGCTGCACTGCGTCTGCATGTAGACTACGCACACACAAAAAGTACCGAAGAGATTCCTTGCACAGTAGAAGGCTGCAATCTTACTTTCCCTCGCACGAGACTTTTCACTATCCATTTAAAAAAAGTGCATAACATGTCACGAGTAACTGTTCCGCGAGCGGAGCAAGCGTGCAACGAATGTGGCATGCTCTTTCGTTGTCCTATGGCACTGAAAAAACATATGTACAAGCATACAGGTCAACAGCTGCCCTATCCCTGCAACATATGTGGCAAGGGCTTCCACATAAACAGCGCTCTTAAAAATCATCTACTACGGCACGCCGGCATCAAGAACTACGTGTGCCCCTATTGTGGTGTGGGCAAGACTACACGGCAGGAATGGAGCAAACACATCCTGACGCACACGCAGGAGAAGATGTTTAAATGCCAGATTTGTGAACATGCCACACATACCAAGCGGGCGCTTGACAATCATGTGAAGATTGTGCACGAGAAGATTAGGAACTACGCGTGTCAATATTGTGGCAAAACATTTGGCAAGTCTCATGCCTGCAAGATTCATGAGATGACGCATACGGGCGAGAAGCGTTGCGAGTGCAAGGTCTGTGGCAAAAAGTTCCTGTATACAGAGAGTCTAACGAAACATTTGAAAATACACGAGAAGAGCGTGGAGCGGGCTATTGATACGTATCGTCAGCGGCAGATGGAACTGGGCGAAGCAACAAACCAAGCAACAGAGCAGCTGCCAAGTAGGAATAACAGCTCTGATTGCCAGGCGGCGGACCAGTTACAAAAGGCTTGTGCCGAATCTGTGGCGACTATTCCTCGCGATCCTCGACGTGTGGAGCGCGTAGATATTGCACAGCTGGCAGGCACCGTTGTTAATCCAATCCCTGCCGTCTTAATACCCTCCAATGCTCCGACGCAGCTGAATCTCATTCAAAAGGAAGGAATGCACTTCTGTCCTGGCTGCAATCAGGGCTTTAACAATTTGGGCAACATGAAGCGCCACTACAAAAGCGTTCACGAGAAGGTGAAGGATTTCGAGTGTCGCTTCTGCGCACGTCGCTTTGCCAACTCGCAATCCCTCAAACAGCACGAGTGGATACACACGGGAGAAAAGCCATATGCCTGTAAAACCTGCGGCACACACTTTCGCCAGGAGGCAGCCTTAATCCGTCACCAGAAAGTGCACGAGGAAAAACCACCGAAACCAGCCAAACCTCCGAAACAAATCACCGAACACTTCCGTCAAAAAGAGCTGCAGAAATGTGAGAAACGTCGTAAAGTGGAAGCGTTGCGCCAAAAAATCGCAGAAGCAGCGAAGGAGGAGTTGCAGGAGCTGGCCAAGCAGAGGGTCCTGGAGAAGCAACAAAACACCTACGAACAGTATCAGGCGGCGGCAGCAGCGGCAACCGAGAGAGCTCAGACTCCAGATGAATCTAAGAGCTAA
- Protein Sequence
- MSTVTTCSVDSICRVCLIYIDGSSAYDLFLLPDLAKTFTVCTSMLVEPKDGYPRRICSNCFERLNDLHDFQKLCVASVLRFKQMVASGVFCPNDPFEPLPVEEVLAKDEQPDNDYDPLLSHKMELIGNEEDVFKLLENVDKETDDVEEVQSECSTVDGSEDDVPLAQRMFNQRSVTDSESGSERKPTASSTRKLISASERHFRRIIACQICHQKFKKKINYDEHMKHHNELLPYQCNDESCKKGFTTAAALRLHVDYAHTKSTEEIPCTVEGCNLTFPRTRLFTIHLKKVHNMSRVTVPRAEQACNECGMLFRCPMALKKHMYKHTGQQLPYPCNICGKGFHINSALKNHLLRHAGIKNYVCPYCGVGKTTRQEWSKHILTHTQEKMFKCQICEHATHTKRALDNHVKIVHEKIRNYACQYCGKTFGKSHACKIHEMTHTGEKRCECKVCGKKFLYTESLTKHLKIHEKSVERAIDTYRQRQMELGEATNQATEQLPSRNNSSDCQAADQLQKACAESVATIPRDPRRVERVDIAQLAGTVVNPIPAVLIPSNAPTQLNLIQKEGMHFCPGCNQGFNNLGNMKRHYKSVHEKVKDFECRFCARRFANSQSLKQHEWIHTGEKPYACKTCGTHFRQEAALIRHQKVHEEKPPKPAKPPKQITEHFRQKELQKCEKRRKVEALRQKIAEAAKEELQELAKQRVLEKQQNTYEQYQAAAAAATERAQTPDESKS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00558090;
- 90% Identity
- -
- 80% Identity
- -