Zghe015550.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Zaprionus ghesquierei
Gene Symbol
D
Assembly
GCA_018904095.1
Location
JAEIGP010000850.1:17486050-17487285[-]

Transcription Factor Domain

TF Family
HMG
Domain
HMG_box domain
PFAM
PF00505
TF Group
Other Alpha-Helix Group
Description
High mobility group (HMG) box domains are involved in binding DNA, and may be involved in protein-protein interactions as well. The structure of the HMG-box domain consists of three helices in an irregular array. HMG-box domains are found in one or more copies in HMG-box proteins, which form a large, diverse family involved in the regulation of DNA-dependent processes such as transcription, replication, and strand repair, all of which require the bending and unwinding of chromatin. Many of these proteins are regulators of gene expression. HMG-box proteins are found in a variety of eukaryotic organisms, and can be broadly divided into two groups, based on sequence-dependent and sequence-independent DNA recognition; the former usually contain one HMG-box motif, while the latter can contain multiple HMG-box motifs. HMG-box domains can be found in single or multiple copies in the following protein classes: HMG1 and HMG2 non-histone components of chromatin; SRY (sex determining region Y protein) involved in differential gonadogenesis; the SOX family of transcription factors [1]; sequence-specific LEF1 (lymphoid enhancer binding factor 1) and TCF-1 (T-cell factor 1) involved in regulation of organogenesis and thymocyte differentiation [2]; structure-specific recognition protein SSRP involved in transcription and replication; MTF1 mitochondrial transcription factor; nucleolar transcription factors UBF 1/2 (upstream binding factor) involved in transcription by RNA polymerase I; Abf2 yeast ARS-binding factor [3]; yeast transcription factors lxr1, Rox1, Nhp6b and Spp41; mating type proteins (MAT) involved in the sexual reproduction of fungi [4]; and the YABBY plant-specific transcription factors.
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 1 2e-29 1.4e-26 92.5 2.7 1 69 161 229 161 229 0.99

Sequence Information

Coding Sequence
ATGGCTACATTATCGTCACATCCCAACTACGGTTTCCATTTGGGCACCGGTCAGGGCCTGGAGCTGCCATCGCCGGGAGACTATGCCTCGCAGGGCTTGGGCAATGCCCAGCTCAGTCCCAGCATGGACATGGATATCAAGCGCGTGCTGCATTACTCACAGAGCGGCGGACTGGCTGCGAGTCTGGCTGCCATGGGCGGATCACCTGGCGGTGGACCCGGAGGTGTCGGCGGCCAGGGAGCCGGTAACATGAGCCACCACATGGCGCACCACATGCACAACGCTGTGGCAGCTCAGCAGACTCTGTCGCCCAACAGTTCCATTGGATCTGCCGGTAGTTTGGGTAGTCAGAGCAGCTTGGGAAGCAGTGGAATGGGCGGAGGCCTTGGCATGGGCGGAACACACAGCTCATCGGCGGGCGCAGGTCCAGGCAATGGATCCATGCACAGTCTGGCCACTTCACCGGGCCAAGAGGGACACATCAAGCGGCCTATGAATGCGTTTATGGTCTGGTCACGTCTGCAGCGTCGTCAAATTGCCAAGGATAATCCCAAGATGCACAATTCGGAGATATCAAAGCGTCTGGGTGCCGAATGGAAACTGCTTGCAGAGTCCGAGAAGCGTCCGTTCATTGATGAGGCCAAGCGCCTGCGTGCTCTGCACATGAAGGAGCATCCGGATTACAAATATCGTCCACGTCGCAAGCCCAAGAATCCGCTTGCCGGCGGCCCACAGGGTGCTTTGCAGATGCAGGGTAATATGAACATGAACATGAACATGAACATGAATATGGCGCAACAGAAGCTGGGAGGAGCCGGTGCTGGCCCAGCGGGCGGTGGCTACAATCCGTTCCATCAGCTGCCTCCGTATTTCGCTCCCTCACATCATCTGGATCAACCGTACCCAGTGCCATACTTCACAGGCTTCGATCCCCTGGCGTTATCCAAGCTGCACCAAAGTGCGGCGGCCAACAATCAGACGCACAAGCATCTTGAGGCGCAACAGGCTGCGTCCCAGTTGCCACCCACCTCGTTGAGCAGCTTCTACTCCGGCATCTACTCGGGCATTTCGGCGCCTTCGCTATATGCTGCACACTCTGCGAATGCCGCCGCCGCCGGACTCTACACCTCATCCTCGACATCATCGCCGGGCTCGTCGCCGGGCACCATCACGCCCAATGGCATGGATGGCTCCATGGATAGCGCGCTGCGGCGACCGGTGCCGGTGCTATACTAG
Protein Sequence
MATLSSHPNYGFHLGTGQGLELPSPGDYASQGLGNAQLSPSMDMDIKRVLHYSQSGGLAASLAAMGGSPGGGPGGVGGQGAGNMSHHMAHHMHNAVAAQQTLSPNSSIGSAGSLGSQSSLGSSGMGGGLGMGGTHSSSAGAGPGNGSMHSLATSPGQEGHIKRPMNAFMVWSRLQRRQIAKDNPKMHNSEISKRLGAEWKLLAESEKRPFIDEAKRLRALHMKEHPDYKYRPRRKPKNPLAGGPQGALQMQGNMNMNMNMNMNMAQQKLGGAGAGPAGGGYNPFHQLPPYFAPSHHLDQPYPVPYFTGFDPLALSKLHQSAAANNQTHKHLEAQQAASQLPPTSLSSFYSGIYSGISAPSLYAAHSANAAAAGLYTSSSTSSPGSSPGTITPNGMDGSMDSALRRPVPVLY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01549537; iTF_01558998; iTF_01554663; iTF_00553698; iTF_00562436; iTF_00472329; iTF_00556493; iTF_00614150; iTF_00509067; iTF_00520595; iTF_00579246; iTF_00610613; iTF_00599545; iTF_01552420; iTF_01553930; iTF_01551694; iTF_01558255; iTF_01550963; iTF_01548821; iTF_00589512; iTF_01556087; iTF_00585931; iTF_00473025; iTF_00616865; iTF_00588802; iTF_00598114; iTF_00567500; iTF_00541723; iTF_00616162; iTF_00542403; iTF_00518405; iTF_00564615; iTF_00595911; iTF_00501768; iTF_00553001; iTF_00582923; iTF_00513423; iTF_00557172; iTF_00576308; iTF_00570360; iTF_00516955; iTF_00514142; iTF_00598846; iTF_00485824; iTF_00525091; iTF_00522136; iTF_00548768; iTF_00573283; iTF_01321155; iTF_00498116; iTF_00533764; iTF_00577028; iTF_00584389; iTF_00495078; iTF_00528012; iTF_00482198; iTF_00497351; iTF_00566757; iTF_00511239; iTF_00544455; iTF_00585159; iTF_00561000; iTF_00549513; iTF_00554347; iTF_00479445; iTF_00551550; iTF_00522922; iTF_00506825; iTF_00593066; iTF_00560227; iTF_00512683; iTF_00540331; iTF_00552268; iTF_00568940; iTF_00476589; iTF_00526541; iTF_00550861; iTF_00582221; iTF_01327853; iTF_00475182; iTF_00563139; iTF_00597326; iTF_00521317; iTF_00470831; iTF_00470832; iTF_00532336; iTF_00538192; iTF_00500273; iTF_00545202; iTF_00586642; iTF_00568217; iTF_01320434; iTF_01322610; iTF_00496563; iTF_00519123; iTF_00498837; iTF_00509781; iTF_00530229; iTF_00572562; iTF_00557877; iTF_00608406; iTF_00583643; iTF_00490743; iTF_00530917; iTF_00534543; iTF_00502487; iTF_00519883; iTF_00601751; iTF_00546616; iTF_00547320; iTF_00802808; iTF_01570200; iTF_00805930; iTF_00575545; iTF_00607033; iTF_00609849; iTF_00506074; iTF_00832122; iTF_01327130; iTF_00478683; iTF_00543707; iTF_01321883; iTF_01324075; iTF_00478684; iTF_00559453; iTF_01324861; iTF_00499550; iTF_00516222; iTF_00495822; iTF_00574015; iTF_00558627; iTF_00619807; iTF_00508288; iTF_00595212; iTF_00492922; iTF_00804352; iTF_01323341; iTF_01326358; iTF_01555378; iTF_01557526; iTF_00901464; iTF_01325627; iTF_00535274; iTF_01556797; iTF_01550244; iTF_01559724; iTF_00528767; iTF_01356097; iTF_00537476; iTF_00493608; iTF_00510504; iTF_00803563; iTF_00805147; iTF_00587360;
90% Identity
iTF_01558998;
80% Identity
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