Zgab006247.1
Basic Information
- Insect
- Zaprionus gabonicus
- Gene Symbol
- -
- Assembly
- GCA_018903695.1
- Location
- JAEIFO010000626.1:3061648-3078640[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 23 8.9e-06 0.00062 19.9 0.4 1 23 113 135 113 135 0.97 2 23 0.0013 0.092 13.1 0.9 1 23 141 163 141 163 0.95 3 23 1.9e-05 0.0013 18.9 3.1 1 23 169 191 169 191 0.97 4 23 4.3e-05 0.003 17.8 4.7 1 23 197 219 197 219 0.99 5 23 7.8e-05 0.0055 17.0 5.7 1 23 225 247 225 247 0.97 6 23 3.8e-07 2.7e-05 24.2 4.3 1 23 253 275 253 275 0.98 7 23 1.4e-07 9.6e-06 25.6 2.4 1 23 281 303 281 303 0.97 8 23 8e-05 0.0056 16.9 6.7 1 23 309 331 309 331 0.97 9 23 1.8e-05 0.0013 18.9 8.4 1 23 337 359 337 359 0.97 10 23 6.2e-05 0.0044 17.3 5.1 1 23 365 387 365 387 0.97 11 23 6.4e-05 0.0045 17.2 8.7 1 23 393 415 393 415 0.97 12 23 6.2e-05 0.0044 17.3 5.1 1 23 421 443 421 443 0.97 13 23 0.00012 0.0084 16.4 9.4 1 23 449 471 449 471 0.96 14 23 8e-05 0.0056 16.9 6.7 1 23 477 499 477 499 0.97 15 23 0.00014 0.0098 16.2 6.5 1 23 505 527 505 527 0.98 16 23 1.2e-05 0.00087 19.5 4.5 1 23 533 555 533 555 0.98 17 23 9e-06 0.00063 19.9 8.1 1 23 561 583 561 583 0.98 18 23 7.3e-06 0.00051 20.2 7.6 1 23 589 611 589 611 0.97 19 23 8.2e-07 5.8e-05 23.2 7.7 1 23 617 639 617 639 0.98 20 23 0.00026 0.018 15.3 9.5 1 23 645 668 645 668 0.95 21 23 9.1e-05 0.0064 16.8 0.9 1 23 674 696 674 696 0.98 22 23 0.00099 0.07 13.5 3.4 1 23 706 728 706 728 0.97 23 23 1.1e-05 0.0008 19.6 1.6 1 23 734 757 734 757 0.96
Sequence Information
- Coding Sequence
- ATGCAGCACGTGAGCGCTGCCAGTTCGGCACCTTCGGTGGTTTCGGCACCGGTGGTGACCACTGGCGGTGGCACCACCATCACCTTGGGCGGAGGACCACCCCCAATAGCCAGTAAAATAACCGGCGGACACGGCGGCGTCAGCGATAATCATCATAATCATAAGGAGGACGGTAGCGGTAAACCGCCGCACGGCATTGAAATGTATAAAGTGAACATTGAGGATATATCACAGTTATTTACGTATCACGAAGTCTTTGGTAAAATCCATGGCGATGTGGTTAATCATGTGGCGGCGCTGATTGTGCACCGTCGCTACCACAGCGAGCGTAAGCCGTTCATGTGTCAGGTGTGCGGTCAGGGTTTTACCACATCCCAGGATTTAACCCGTCATGGTAAAATTCATATTGGCGGTCCCATGTTCACCTGCATTGTCTGCTTCAATGTGTTCGCAAATAACACAAGCCTGGAGCGACATATGAAGCGACATTCGACAGATAAACCATTCGCCTGCACTATTTGCCAAAAGACTTTTGCACGCAAAGAGCATCTGGACAATCATTTTCGTTCCCATACGGGCGAAACGCCGTTCCGTTGCCAGTACTGCGCCAAGACGTTTACGCGCAAGGAGCACATGGTCAATCATGTGCGCAAACACACGGGTGAGACGCCACATCGTTGCGATATTTGTAAGAAGTCCTTTACGCGCAAGGAACACTATGTTAACCACTACATGTGGCACACTGGTCAAACACCGCATCAGTGCGATGTCTGTGGCAAGAAATACACACGCAAGGAGCATCTAGCCAACCATATGCGCTCCCACACCAACGAGACGCCGTTCCGTTGTGAGATCTGCGGCAAGAGCTTTAGCCGCAAGGAGCACTTCACCAATCACATACTCTGGCATACAGGTGAGACGCCACATCGGTGCGATTTTTGTTCAAAGACGTTTACGCGCAAGGAACACCTGTTGAATCACGTGCGCCAACACACTGGAGAGTCGCCACATCGCTGCACATACTGCCCGAAGACGTTTACGCGCAAGGAGCATCTTACGAATCACATACATCAGCACACGGGTGAGACGCCGCATCGGTGCGAGTTCTGTTCCAAGGCGTTTACACGCAAGGAGCATTTGGTTAATCACGTGCGCCAACATACGGGAGAGTCCCCACATCGTTGCACATACTGCTCGAAGACGTTTACCCGAAAGGAACATCTCACAAGCCACACATATACGCACACGGGTGAGACGCCGCATCGGTGCGAGTTCTGTTCCAAGGCGTTTACACGCAAGGAGCATTTGGTTAATCACGTGCGCCAACACACAGGAGAATCGCCACATCGTTGCACATACTGCTCGAAGACGTTTACCCGCAAGGAGCATCTCACGAATCACTTACATCTGCACACGGGCGAGACGCCACATCGGTGCGATTTCTGCTCCAAGACGTTTACGCGCAAGGAACATCTGTTGAATCACGTGCGTCAGCACACCGGGGAGTCGCCGCACCGCTGCTCGTATTGCATGAAGACGTTTACGCGCAAGGAGCATCTGGTGAATCATATACGCCAGCACACGGGTGAGACACCGTTCAAGTGCACGTACTGCACGAAAGCGTTCACTCGCAAAGATCACATGGTTAATCATGTACGGCAACATACAGGCGAATCGCCGCACAAGTGCACATACTGCACCAAGACGTTTACACGCAAGGAGCATTTGACGAATCATGTGCGTCAGCACACGGGCGATTCGCCGCATCGTTGCAGCTATTGCAAGAAGACCTTTACCCGCAAGGAGCATTTGACGAATCATGTTCGTCTCCATACAGGTGATTCGCCGCACAAATGTGAATACTGTCAGAAGACGTTTACGCGCAAGGAGCATCTCAATAATCATATGCGCCAACATTCGAGTGACAATCCCCATTGCTGCAATGTGTGCAACAAGCCGTTCACACGCAAGGAGCATCTGATCAATCATATGTCACGTTGCCACACCGGCGATCGTCCCTTCACCTGTGAGACATGTGGCAAATCGTTCCCCCTCAAAGGCAATCTGCTATTCCATCAGCGCAGCCACACCAAGGGACAGGAGTGTGAGCGTCCGTTTGCCTGTGAGAAGTGCCCCAAGAATTTCATATGCAAAGGTCACTTGGTCTCGCACATGCGCTCCCATTCGGGTGAGAAACCACACGCGTGCACACTGTGCAGCAAGGCTTTCGTCGAGCGCGGCAATTTGAAGCGCCACATGAAGATGAATCACCCGGATGCTATGATGCCGCCACCACCCGTGCATCCGCATCCGCAAATACCGGCTGGTGTGCTGACCCAAGTCAAGCAGGAAGTGAAACCGATCATAATTCCCCATCACTCGGCGACGACCACGATGCATACCATCCAACAGATAACAGCGGGCGCAGCAGCGGCTGGCGCCGCACCTACGCAGCAGCGCAGTTCCCTACTGCAGCTAAACGACGATGTCCTGGCCCTGATTGTGTCCCAGCTGAATGTGTATCAACAGTTCGAGCTGTCACAGCTCCACAGTCGTCTCCGGAACATTGTCCAGTCATTGTGGCGGACGCGCGTGCGCAATGTAGCGCTGCAGGAGGAACAGCTACAGCGTGCCTCCTCGCGACAGTACCTGACGTTCATGTTGCGCCTGGCACCGCATCTGGAGCGCCTGAGTTGCCATCAAATGGAAGTGCGCCGACTGCGACAGCTGAGTGATCAAACGTTGCGCGGCGTCACTAGCCTGGAGTGGCTTGGAGGCGATCCTCCGCCGCGTGGACGTGGTGGTGGACGCTCCCGCTTTGTTGACGAGGATGTGCGCCTCTTGAAGCGTGTCTTTCCTGCGTTGCGCAAATTGAAACTGCGTAGTTGCCGCATCACTGGCAAATACCTTTGCGAACTGGAGCTACTCACCGATCTCTGCCTGGATGACTGTCAGTATCTGGAATCTCAGAACTTTCGCGACATCTTTCGCCAGCTGCGGCTGCGCAAGTTCGATATCATGGAGGATTGCGATGAGGTGAATTGCTGTGACCTGGCCGATGTGCAACTGTGCCCCACGCTGGAGCACATCAAGATCGCCGACTATCATCTGTGCATGGAGTCGGACATTATGCAGCAGCTGCTGAGTCTGCCACGCCTGCAGAAACTATCGATATACTCCAAGAACTTCATCTTCGATGTGCTGGCTCGCGTGGCACGTCCTGGTCCTGGTGGCGCAGCGGTCAAGCAGATCGAAGGATTTCGCTTTGCCGGCATGCTACACGATTACGGACGTTTCTTTGATGAACTGAGTAATCTGCGCCAGCTACGTCGCCTGGAGGTGCACGCGCAGTCGGAGGAGGAGGGAGCACAATTGCAGTGTCTGAGTGATCAGATGCTCAGCCGCTTGGCGCCACAATTGCCGGAGCTGTGCGAGCTGCATTTGTGCGGCTATCAGCTGGAGAGTCCAGCCGGGCTGCTCCAATTTCTGAGCAACTGCCGCCAGCTGCGTCTGCTGAACATGAACAGATCCCGTTGCATTGGTGATGCCTTTGTCGCACGTTGCCTGGCACTGCTGATGAAGCAGAGCTGGCGCACGCAACCACTGGAGTTGTGGATCAGGCACAGTGACATCAGTGCCAGTGTAGCCCAGAATCCACGTTACCTGGTCAGCAACAAGTGGCTGCGAATCGATGCCCAACAAATGTCTCCACATCTGGGCAACCTGCCTGGCGTTCTTAAGTTTAGTTTTCTAAGATGA
- Protein Sequence
- MQHVSAASSAPSVVSAPVVTTGGGTTITLGGGPPPIASKITGGHGGVSDNHHNHKEDGSGKPPHGIEMYKVNIEDISQLFTYHEVFGKIHGDVVNHVAALIVHRRYHSERKPFMCQVCGQGFTTSQDLTRHGKIHIGGPMFTCIVCFNVFANNTSLERHMKRHSTDKPFACTICQKTFARKEHLDNHFRSHTGETPFRCQYCAKTFTRKEHMVNHVRKHTGETPHRCDICKKSFTRKEHYVNHYMWHTGQTPHQCDVCGKKYTRKEHLANHMRSHTNETPFRCEICGKSFSRKEHFTNHILWHTGETPHRCDFCSKTFTRKEHLLNHVRQHTGESPHRCTYCPKTFTRKEHLTNHIHQHTGETPHRCEFCSKAFTRKEHLVNHVRQHTGESPHRCTYCSKTFTRKEHLTSHTYTHTGETPHRCEFCSKAFTRKEHLVNHVRQHTGESPHRCTYCSKTFTRKEHLTNHLHLHTGETPHRCDFCSKTFTRKEHLLNHVRQHTGESPHRCSYCMKTFTRKEHLVNHIRQHTGETPFKCTYCTKAFTRKDHMVNHVRQHTGESPHKCTYCTKTFTRKEHLTNHVRQHTGDSPHRCSYCKKTFTRKEHLTNHVRLHTGDSPHKCEYCQKTFTRKEHLNNHMRQHSSDNPHCCNVCNKPFTRKEHLINHMSRCHTGDRPFTCETCGKSFPLKGNLLFHQRSHTKGQECERPFACEKCPKNFICKGHLVSHMRSHSGEKPHACTLCSKAFVERGNLKRHMKMNHPDAMMPPPPVHPHPQIPAGVLTQVKQEVKPIIIPHHSATTTMHTIQQITAGAAAAGAAPTQQRSSLLQLNDDVLALIVSQLNVYQQFELSQLHSRLRNIVQSLWRTRVRNVALQEEQLQRASSRQYLTFMLRLAPHLERLSCHQMEVRRLRQLSDQTLRGVTSLEWLGGDPPPRGRGGGRSRFVDEDVRLLKRVFPALRKLKLRSCRITGKYLCELELLTDLCLDDCQYLESQNFRDIFRQLRLRKFDIMEDCDEVNCCDLADVQLCPTLEHIKIADYHLCMESDIMQQLLSLPRLQKLSIYSKNFIFDVLARVARPGPGGAAVKQIEGFRFAGMLHDYGRFFDELSNLRQLRRLEVHAQSEEEGAQLQCLSDQMLSRLAPQLPELCELHLCGYQLESPAGLLQFLSNCRQLRLLNMNRSRCIGDAFVARCLALLMKQSWRTQPLELWIRHSDISASVAQNPRYLVSNKWLRIDAQQMSPHLGNLPGVLKFSFLR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01554092; iTF_01550404; iTF_01557691; iTF_01558430;
- 90% Identity
- iTF_01550404; iTF_01554092; iTF_01557691; iTF_01558430;
- 80% Identity
- -