Zdav000319.1
Basic Information
- Insect
- Zaprionus davidi
- Gene Symbol
- wek
- Assembly
- GCA_018903715.1
- Location
- JAEIGL010000007.1:1432494-1434368[-]
Transcription Factor Domain
- TF Family
- HMGA
- Domain
- HMGA domain
- PFAM
- AnimalTFDB
- TF Group
- Unclassified Structure
- Description
- This entry represents the HMGA family, whose members contain DNA-binding domains, also known as AT hooks due to their ability to interact with the narrow minor groove of AT-rich DNA sequences. They play an important role in chromatin organisation [1]. The high mobility group (HMG) proteins are the most abundant and ubiquitous nonhistone chromosomal proteins. They bind to DNA and to nucleosomes and are involved in the regulation of DNA-dependent processes such as transcription, replication, recombination, and DNA repair. They can be grouped into three families: HMGB (HMG 1/2), HMGN (HMG 14/17) and HMGA (HMG I/Y). The characteristic domains are: AT-hook for the HMGA family, the HMG Box for the HMGB family, and the nucleosome-binding domain (NBD) for the members of the HMGN family [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 2e-06 0.033 13.7 1.0 9 16 203 210 196 211 0.88 2 3 4e-07 0.0064 16.0 1.0 9 21 341 354 334 355 0.80 3 3 0.38 6.2e+03 -3.2 0.0 14 20 401 407 401 408 0.81
Sequence Information
- Coding Sequence
- ATGGCAGAACAGAACGAGAATGAAGCTGTTGAGTGTCACTGGGTAAATTGGTGTCGTCTCTGCGCCAAGGACGATGTTCTTGGCAACGTAAAGGTCGACTCGAGCGAGAAGGGGACCGACTGGAACAGCGTCTTGCGTATGGCCATCCGAAAGTATTTCGATGTACATATGCGACCGGATGATGAGCTTAGCGGTGTGATCTGCAAGGAATGCTATACATTAATAAGCGAACTTATTGACTTTGCGGAACGCGTCAACAAGGTTCAGGCAATCTTTGAAGTGTTACGGCATTCTGAGCCGAATAAGATGCTTGACGTGAAGGCTCTTCGTCAGCAATACGCACTTCAAGATGGCGACTGGACGCACATAATCAAGCCAGTTTCGGATATCGACAACAATGTGTCAAAACAAGCTGTTATCGCGGAAGAATTTCCAGTGGAAATGCTCGCGCCGAAACAGGAATATCTCAACTTGAGCCAAGAAGTGGAAGTCGAGCAACCAAACCCTCTTGACCACTGTGAGGAACGGAATGTAAGTCAGTTGCCTACTGAGGAAATTTTTGTTGAAAGATGTGATGCCAAAGATACGACTCAAAATAGTTCCCTCAAAAGACCTCGGGGTCGTCCAAAAAAACATTCAATGAACGCCGACAAAGGCGATAAGCCAGTTTCTGACCTTAATGAAGATCTACCGAATGATTCTGCCAAACAACTAATTCCAATATCTGACACCGCAGAACCAGAAGTTCCTGGAACTTCATTCATTCCAGACTGGACGCACATGTTCACGCCAGTATCGGATATCGACAACAATGTGTCAGAACAAGCTGATATCGCGGAAGAATTTCCAGTGGAAATGCTCATGCCGAAACAGGAATTTCTTAACTTGAGCTATGAAATGGAAGACGAGCAACCAAACCCTCTTGACCACTGTGAAGAATCGATTGTAAGTCAGTTGCCTACTGAGGAAATTGTCGTTGAAAGATGTGATGCCAAAGATACGACTCAAAATAGTTCCCTCAAAAGACCTCGGGGTCGTCCAAAAAAATATTCAAAGAACACCGACAAAAGCGATAAGTCAGTTAATAAAGAGATACCGAATAAACGCCGCAAATTGAAGTGTAAATGGTGCAGCAAATTGTACCATAATCCCAAGTCCTACGAAAAGCATTTAAGGCTTGGCTGCCGCAAAGTGGAACCACGACCAAAGGTGGATAAGAATACATTCTGCAATATTTGCAATAAAACGTTGTCGTCTGCAGCTGCCTTCAAGCTGCACATGGAGGGCACGCACGATAATGTCAAGCCCTTTGTGTGTGACCACTGTGGCAAGCAGCTAAAGTCTTTAACAGCTCTTAATGAGCACAAGCTGGTGCACACGGAGGATCGTCCGTTTAAATGTACGATGTGTGATGCTTGCTTCAAGAACAAAGCTCGTCTTAGAGTTCACTACCAAACCCATGAAGAACCCAAATATATTTGCAACATCTGCGGCAAAAAGTTGCAGACTCGACGCACGTGGAACCAGCACAAGTTGGTACACGTTGAGGATCGCAGATTCAAGTGTGACGTTTGCTGTGCCCTCTTCAAACGTTCGAAAACTCTTAAGACGCATCTACTTATCCACGCAGGAATGCGGCCGTACGTTTGCAAATACTGCGGTCAAACATTCTCATGTAATGCGAATTGTCGTGCCCACAAGATGAAAAAGCATACAAAGGAGTTAATGGAAGAAGAGAACGAGGACTTTCCCAATCGCATAAGTGTGCCTTCTCTGGATGAACTTCGGGTCATGTAA
- Protein Sequence
- MAEQNENEAVECHWVNWCRLCAKDDVLGNVKVDSSEKGTDWNSVLRMAIRKYFDVHMRPDDELSGVICKECYTLISELIDFAERVNKVQAIFEVLRHSEPNKMLDVKALRQQYALQDGDWTHIIKPVSDIDNNVSKQAVIAEEFPVEMLAPKQEYLNLSQEVEVEQPNPLDHCEERNVSQLPTEEIFVERCDAKDTTQNSSLKRPRGRPKKHSMNADKGDKPVSDLNEDLPNDSAKQLIPISDTAEPEVPGTSFIPDWTHMFTPVSDIDNNVSEQADIAEEFPVEMLMPKQEFLNLSYEMEDEQPNPLDHCEESIVSQLPTEEIVVERCDAKDTTQNSSLKRPRGRPKKYSKNTDKSDKSVNKEIPNKRRKLKCKWCSKLYHNPKSYEKHLRLGCRKVEPRPKVDKNTFCNICNKTLSSAAAFKLHMEGTHDNVKPFVCDHCGKQLKSLTALNEHKLVHTEDRPFKCTMCDACFKNKARLRVHYQTHEEPKYICNICGKKLQTRRTWNQHKLVHVEDRRFKCDVCCALFKRSKTLKTHLLIHAGMRPYVCKYCGQTFSCNANCRAHKMKKHTKELMEEENEDFPNRISVPSLDELRVM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01550989; iTF_01551282; iTF_01552021; iTF_01558578; iTF_01558287; iTF_01550552; iTF_01559989; iTF_01555670;
- 90% Identity
- iTF_01558578;
- 80% Identity
- iTF_01552021;