Zafr009932.1
Basic Information
- Insect
- Zaprionus africanus
- Gene Symbol
- zfh1
- Assembly
- GCA_018151435.1
- Location
- JAECXB010000395.1:533838-558382[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 0.021 1.4 9.3 1.5 2 23 79 101 78 101 0.95 2 9 0.00032 0.023 15.0 0.2 1 23 231 253 231 253 0.97 3 9 1.3e-05 0.00087 19.5 0.6 2 23 267 288 266 288 0.97 4 9 0.00013 0.009 16.3 5.5 1 23 297 319 297 319 0.98 5 9 0.00019 0.013 15.7 1.4 3 21 327 345 325 346 0.94 6 9 0.0062 0.43 11.0 0.7 2 21 587 606 586 607 0.92 7 9 9e-06 0.00063 19.9 0.7 1 23 955 977 955 977 0.94 8 9 4.4e-05 0.0031 17.7 7.4 1 23 983 1005 983 1005 0.98 9 9 0.0022 0.16 12.4 4.3 1 21 1011 1031 1011 1032 0.96
Sequence Information
- Coding Sequence
- ATGTTGTCCTGTTTGGCGCCATCGTCGACACGTTTTGGCCAAGAGGATAACATTATACAGCAGAGCATGCCATCGTCCACAGCCTTCTCCATGCAGTTTCCCTCTTTGGCCTCCAGTCTGCACCATCACCAAGCACACAGCAAGCCCGGCAATGTGGCTGCCCCCAGCGAGGAGGAGGAGCACGGCCCGCACACAGCCAGCACGACGGGCAGTGCAAGCGAGGATTACCTGGTCAAGTGCACGCAGTGCCACCAGCGCTTCAATGAGTTCCAGTCCCTTAGCGAGCACATTGCCAGCGAGCATCCGCACGACAAGCTCAACTTCGAGCCGAGTCTGCGTGCTGCGGGCGCAGTGCAGCCCGAGAGCGAGGCGGAGGAGGACGAGCAGAGCAACTTGAGCTGCAGCAGCCGCCGCTACGCCAAGTCACCGTCGAGCAGCAGCAACAACAACAACAACAACAGTGAAACAACCAAGAACCAAAACCAGAACCAGAGCAACAGCAACAGTCGCTCCCCGCTCTGCTCCCCCGTTGTTGCCCCGACGCACGCGGCGCACTCGAGCGATCTCTTCGCCCACCTGCCGCACCCTCCCCCTCAGCTGCCCGCCCACCTGCACGCCCAGTTCATGGCAGCCGCCGCCTCGCTGGCCATGCACCCCGGCTCCACGACGGGCGATCTCGGCGGCGCCGCCTTCCCCTGCATGCAGTGCACCGCGTCCTTTGCGACCCGCGAGCAGCTCGAGCAGCACCAGCTGCTGCACTCCCCTAACGGGCAGCCAACAACCCAGAACGTGACGCAGACTTGCAAGATATGCAACAAGGCTTTCGCGAACGTTTACCGCCTGCAGCGGCACATGATCAGCCACGACGAGTCGGCGCTGCTGAGGAAGTTCAAGTGCCTACTGTGCGAGAAGGCGTTCAAGTTCAAGCACCACCTGAAGGAGCACGTGCGCATCCATTCCGGCGAGAAGCCCTTCGGCTGCGACAAGTGCGGCAAGCGCTTCTCGCACTCGGGCAGCTTCTCCTCCCACATGACCTCGAAGAAGTGCACCAACATGACCCTCAAGGTGAGCAACCCCAGCAACGGCAGCAACAGCAGCAGCAGCAGTAATCGGCAGCTCCTCAAGAGCCTCGATAAAAATGCCAATGCTGGACGCTCATCCTCAGATCTGCAGCCACTGCTGCCGGGCAAGCGAGGCTGCAAGCTGCCCGACCCGGTGCTGCCCAATCCCATGAACTACTTTGCGGGCGAAGCACAGATGTCGGTGCCGGCGGGGCCCAATGGACCCGGAGCCTTCTATCCCAACTACAGTGCCATGAACGCGGCCTTGATGGCGTTCCCGAATGCCATCATGGCTGCTCTGGACCCACGCATGCATCCGTTCGGCATACAGCGACTGCTGGAGATGACAGCCGCCGGGCAACAGCATCGCGAGGTGCAGCACCAGCAGCAGCAACAGCAGCAGCAGCAGCACGAGGAGCCTGCTTACGAGCTCAGCAAGGATGACGACGAGACGCCCGATGAGCCCAAGCTTGTCATGGATCTCGAGGAGGCCGAGGCCAAGCCGGCGACCCCAGCTCCAGAGGCGCCTGCGGTCGTTGAGCCTGTTGCCGATGCCGGCTCGTTCAAGCAGGAGCCCAGCCGGGAGCCAACGCCTGTGCTGGAGAGTGCTCCAGCCACGCCCAAGTCCATCAAAGTAGAGCAGGAGGAGGAAGCGGCGCCTGTGGAGGAGTCGCGTCCCCAAACCCCACAGGATCTGCGCTGCAGTCGCTGCTCGAAGCAGTTCAATCATCCAACTGAGCTGGTGCAGCACGAGAAAGTTCTCTGCGGGCTTATCAAGGAGGAGCTGGAGCAGCACTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACGAGGATGAGGAGGAGGAGGAAGAGCCCCGCCAGGACTTCAATGCCGGCAGCAGCGACAGCGGCGAACGCAAGGTGCGCGTACGCACCGCCATCAACGAGGAGCAGCAGCAGCAGCTGAAGCAACACTACGCCCACAACGCGCGTCCGAGTCGCGACGAGTTCCGCCTGATCGCCGCGCGGCTGCAGCTCGACGCGCGAGTCGTCCAGGTCTGGTTCCAGAACAACCGCTCGCGTGAGCGGAAGATGCAGAGCTATGCGAGCAACGGTGAGCAGCACGCCGCCGCCACCTCGGCAGCAGCTCAGCCACGCGCTGCTGGTGAAGATCAGCCGTTGGACTTGTCTGTGAAACGGGATGCATCGCCGATCTATGGTCTGGCACCTCAGCAGACAGCCGTGAGCGAAACAGCCGCTGACTTTCAGGAGACAATGGCCATCAATCTGAGCCGCAAGCTGTCCAGCTCGGCCTCCATGTCGCCGTCCTCGCTGTCGCCCTGCTCGGGTGCATCCTCGCTGCAGCAGTCGGCCGCTGCTGCCGCCGCTGCGGCCATCTACTTTGCGCCGCCCTCGCCGCCCAGCCTGCACGAGGCAGCACCCTCGATGCCGCCACATGGGGCAGCCGTGGCACGTGTGCAATCCTTTCCGGGCCTGCCGCCCTACATGATGCCCCGCCTGCCCATGGAGGCGCTCTTCCAGATGCGACCCGGCGGCGAGTACGCGCCCAATCCGCTGATGAACAGTATTAAGCTGCCCGACTACCGCGGCACCAGCCTGAGTCCAGGAGGCTCGGAGAAGCGTTCCTGGCGCGACGACGACTCGCGCATCTCGCACGAGGATGACTACGTGCTGGGCGTCGGCGGCGGACTGCTGCCACCCAAGCCGAAGCGCGCCAAGGCCGAGACGCATGGCCACGCCGGCGATCCGGATCTGCCCTTCGTGTGCAACCAGTGCGACAAGGCGTTCGCCAAGCAGAGCTCCCTGGCGCGTCACAAGTACGAGCATTCCGGTCAGCGTCCCTACCAGTGCATGGACTGCCCCAAGGCCTTCAAGCACAAGCACCACTTGACGGAGCACAAGCGTCTGCACTCCGGCGAGAAGCCCTTCCAGTGCTCCAAGTGCCTGAAGCGCTTCTCCCACTCGGGCAGCTACAGCCAGCACATGAACCACCGTTACTCCTACTGCAAGCCCTACAGGGAATAG
- Protein Sequence
- MLSCLAPSSTRFGQEDNIIQQSMPSSTAFSMQFPSLASSLHHHQAHSKPGNVAAPSEEEEHGPHTASTTGSASEDYLVKCTQCHQRFNEFQSLSEHIASEHPHDKLNFEPSLRAAGAVQPESEAEEDEQSNLSCSSRRYAKSPSSSSNNNNNNSETTKNQNQNQSNSNSRSPLCSPVVAPTHAAHSSDLFAHLPHPPPQLPAHLHAQFMAAAASLAMHPGSTTGDLGGAAFPCMQCTASFATREQLEQHQLLHSPNGQPTTQNVTQTCKICNKAFANVYRLQRHMISHDESALLRKFKCLLCEKAFKFKHHLKEHVRIHSGEKPFGCDKCGKRFSHSGSFSSHMTSKKCTNMTLKVSNPSNGSNSSSSSNRQLLKSLDKNANAGRSSSDLQPLLPGKRGCKLPDPVLPNPMNYFAGEAQMSVPAGPNGPGAFYPNYSAMNAALMAFPNAIMAALDPRMHPFGIQRLLEMTAAGQQHREVQHQQQQQQQQQHEEPAYELSKDDDETPDEPKLVMDLEEAEAKPATPAPEAPAVVEPVADAGSFKQEPSREPTPVLESAPATPKSIKVEQEEEAAPVEESRPQTPQDLRCSRCSKQFNHPTELVQHEKVLCGLIKEELEQHXXXXXXXXXXXXXXXXXXXXXXXXXEDEEEEEEPRQDFNAGSSDSGERKVRVRTAINEEQQQQLKQHYAHNARPSRDEFRLIAARLQLDARVVQVWFQNNRSRERKMQSYASNGEQHAAATSAAAQPRAAGEDQPLDLSVKRDASPIYGLAPQQTAVSETAADFQETMAINLSRKLSSSASMSPSSLSPCSGASSLQQSAAAAAAAAIYFAPPSPPSLHEAAPSMPPHGAAVARVQSFPGLPPYMMPRLPMEALFQMRPGGEYAPNPLMNSIKLPDYRGTSLSPGGSEKRSWRDDDSRISHEDDYVLGVGGGLLPPKPKRAKAETHGHAGDPDLPFVCNQCDKAFAKQSSLARHKYEHSGQRPYQCMDCPKAFKHKHHLTEHKRLHSGEKPFQCSKCLKRFSHSGSYSQHMNHRYSYCKPYRE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01548758; iTF_01551628; iTF_01551938; iTF_01550893; iTF_01551179; iTF_01557462; iTF_01557748; iTF_01558486; iTF_01558187; iTF_01556729; iTF_01557010; iTF_01553084; iTF_01553420; iTF_01550495; iTF_01550179;
- 90% Identity
- iTF_01548758; iTF_01556729; iTF_01557010;
- 80% Identity
- iTF_01548758;