Yseq036137.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Ypsolopha sequella
Gene Symbol
-
Assembly
GCA_934041175.1
Location
CAKOGU010002151.1:55782-74795[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 17 0.00012 0.011 17.3 0.1 3 23 127 147 126 147 0.97
2 17 1.1e-06 0.0001 23.7 1.2 1 23 153 175 153 175 0.99
3 17 6.6e-06 0.00062 21.2 2.7 1 23 181 203 181 203 0.99
4 17 2.5e-06 0.00023 22.5 3.0 1 23 218 240 218 240 0.99
5 17 0.00018 0.017 16.7 0.6 1 23 255 277 255 277 0.98
6 17 6e-05 0.0057 18.2 3.1 1 23 292 314 292 314 0.98
7 17 7.5e-07 7.1e-05 24.2 1.5 1 23 329 351 329 351 0.99
8 17 1.3e-05 0.0012 20.3 2.1 1 23 357 379 357 379 0.99
9 17 0.043 4 9.2 1.8 1 23 386 408 386 408 0.98
10 17 7.1e-07 6.7e-05 24.2 2.3 1 23 414 436 414 436 0.99
11 17 0.049 4.7 9.0 1.8 1 23 443 465 443 465 0.98
12 17 2.9e-06 0.00028 22.3 1.5 1 23 471 493 471 493 0.99
13 17 0.00055 0.052 15.1 0.7 1 23 500 522 500 522 0.99
14 17 0.00027 0.025 16.1 4.5 1 23 528 550 528 550 0.98
15 17 0.0023 0.22 13.2 0.3 1 20 556 575 556 578 0.93
16 17 4.5e-05 0.0043 18.6 1.4 2 23 585 606 584 606 0.96
17 17 4.1e-06 0.00039 21.8 1.4 1 23 612 635 612 635 0.97

Sequence Information

Coding Sequence
ATGTTCGAGCAGCAGATCAAGGCTGAGCCTATGAGCTTCTACACCCACCCGCACGTGCAATCAGGGCCGCCCACCATTGTCCGTTCAGACTCTGACCATGGAATCATCATGTCGCAGCACCACCCTGATGACTCTAAAGACAGCCTCATTCATCAACAAGTACAACATCAGGAGATGCTGGAGCAACACAGACAGCAAGAGATGCAACATCACGATGACGAGCTGAGCTTCAAAGGAATGGATGATGAAGGAGTCGAAATGGAAATGGATAGTCGACAATGCTCTCAGGGCATGGGAGTCGACTTGGGCTCGGTACAAACTAAAATGGAAATCCCAAACGGAGGACCACAATCTGCGCCACGTTCAAAACCCCAGGCCTGTAAGGTTTGCGGCAAAGTACTTTCATCTGCCTCATCATACTATGTCCATATGAAACTTCACTCCGGAAACAAACCATTTCAGTGTACTGTTTGTGACgcagcgttctgtcgcaagccgtatttagaggtgcacatgcgcacgcacaccggcgaacgacccttccagtgtgatctgtgcctcaaacgattcacacaaaagtccagtttgaacacgcacaaacgcgtccatacagatgagcacatgcgcgccttgatggtgaaggaccggccataccaatgtgagctgtgtcagatgcggttcacgcagagttccagcctcaaccgacacaagaaaacacatacggAGGAGCACAGGCGAGCGCTGCTGGCTAAGGAACGACCCTACCAGTGCGGCGTCTGCTATGTCAGATTCACCCAGAAATCGAGTTTGGGCCGGCACGGAAAGATACATACCGAGGAGCACAGACGGGCCCTGTTAGAGAAAGTCcgcccgtaccagtgccacatctgttttatgcgcttcactcagaagtccagcctgggccgacatgGGAAAATACATACTGaggagcacatccaatcgctgatcaacaaagtgcgtccgtatcagtgcgacgtatgtgacaaacggttcacgcagaagtccagcttgggaactcacaaacgtatacacactggcgagcggccgtatcagtgcgacgcgtgcctcaagcgcttcacgcagaagtcaagcctcaatatacataagaggacgcacacagtccagggcaggccgttccagtgcctctcgtgtccggccgccttcacctgcaagcagtacctggagattcacacgcggacgcacaccggcgagcgaccctaccagtgcgacatctgcctcaagagatttacgcagaagtccagtctcaacatacacaagcggacccactcagtccaggggcggccgttccaatgcctgcaatgtccagctgccttcacttgcaagcagtacttggagatacacaaccgcacgcacactggggagcgaccttaccaatgcgatgtgtgtctcaagagattcgcgcaaaaatctacactcaacatacacaaaagaacgcacacagtgcaagggcgtccgtatcaatgcatggagtgtccggccgcgttcacctgcaagccgtacctcgagattcacatgcgcacgcacacgggcgagcgacccttccagtgtgaagtctgctgcaaacggttcacgcagaaatctacgctcaacattcacaaacgcattcatactgGAGAACGTCCATACGCCTGTGATATTTGTCAGAAAAGATTTGCTGTGAAGAGTTACGTAACGGCACACAGATGGTCCCACGTCGCAGATAAGCCGCTGAACTGCGACCGCTGCTCGATGACGTTCACATCCAAGTCTCAGTTCGCGCTGCACATCCGCACTCACTCCGCTGGCTCGTGTTACGAGTGTTCTGTGTGCGGCCGGACCTTCGTGCGCGACAGCTATCTTATACGACATCATAACCGAGTGCACCGTGAGAACCACAGTAACGTCTCAGCTAACAGCATAGGAACCATCAACAGCGTCGCTACAAACACTAACAACTCTAATAACAGCAACTTTGACACGCCCGGCGTTTGTGACTTAAGCTTCGTACCGCTTGTGAACCGCTACATGACGTCACAGGGCACGCAAGTGTCGATGCAGGACACGAGCAAGATGTCGGCCCTGTCGCCGCAGTCCATCGCCTCTATTTCATCGCCCCCGCCTCCGCACACCCCCACCCCGCAGCCTATGTCGGGACAGATGCATCTTGCCGACTGA
Protein Sequence
MFEQQIKAEPMSFYTHPHVQSGPPTIVRSDSDHGIIMSQHHPDDSKDSLIHQQVQHQEMLEQHRQQEMQHHDDELSFKGMDDEGVEMEMDSRQCSQGMGVDLGSVQTKMEIPNGGPQSAPRSKPQACKVCGKVLSSASSYYVHMKLHSGNKPFQCTVCDAAFCRKPYLEVHMRTHTGERPFQCDLCLKRFTQKSSLNTHKRVHTDEHMRALMVKDRPYQCELCQMRFTQSSSLNRHKKTHTEEHRRALLAKERPYQCGVCYVRFTQKSSLGRHGKIHTEEHRRALLEKVRPYQCHICFMRFTQKSSLGRHGKIHTEEHIQSLINKVRPYQCDVCDKRFTQKSSLGTHKRIHTGERPYQCDACLKRFTQKSSLNIHKRTHTVQGRPFQCLSCPAAFTCKQYLEIHTRTHTGERPYQCDICLKRFTQKSSLNIHKRTHSVQGRPFQCLQCPAAFTCKQYLEIHNRTHTGERPYQCDVCLKRFAQKSTLNIHKRTHTVQGRPYQCMECPAAFTCKPYLEIHMRTHTGERPFQCEVCCKRFTQKSTLNIHKRIHTGERPYACDICQKRFAVKSYVTAHRWSHVADKPLNCDRCSMTFTSKSQFALHIRTHSAGSCYECSVCGRTFVRDSYLIRHHNRVHRENHSNVSANSIGTINSVATNTNNSNNSNFDTPGVCDLSFVPLVNRYMTSQGTQVSMQDTSKMSALSPQSIASISSPPPPHTPTPQPMSGQMHLAD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00010401;
90% Identity
-
80% Identity
-