Yseq034211.1
Basic Information
- Insect
- Ypsolopha sequella
- Gene Symbol
- -
- Assembly
- GCA_934041175.1
- Location
- CAKOGU010001691.1:137897-145926[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 8.6e-09 6.1e-06 27.0 0.0 3 39 121 156 119 162 0.89
Sequence Information
- Coding Sequence
- ATGATAGGACAGGAGCTTTTACTACAATCTCCAGACAAAACTAGCTCGTCTGGCATATTATGTAACTCTACAGACGCCGAGCAAAATCAAGAAAGACCTTATGAAATGACTAGAAAGCGGAAGCATATCCCGGACGACCAGACAACTGCTGGGTCTCTGCAAATAACCGAAGATAAAGATGAACGAGAACTTCCATATGAATTAGGTGTCGAAAATTACGATGAAACTATTGCCAATGTCAGTGGGCACAGAGTTGTTGATATTAATCACTTTTTCAATGAACTGATGAAGCCAAAAATTAAAAACAAAAGCTCTACAAAGAAATCCAAAGAAATACGCCGACGTAAAATATATGACTCAGAAACCTTAAAAAAGGCCCTGCAAGCTGTCAAAGAGGGAATGAGCAAGAAATTGGCGGCAAAGACTTACCAAGTGCCTCGGGCTACTTTGCAATATAGGATTAAGAACCCTGAGCACCAGTCGCGTCCTGGCCCTCCTACTATTCTGACAGAAAACGAAGAAAAAGACCTCGAAGATTGGATTTCACTCAGTTGTAAAAAAGGTTTCCCAAAACGTAAAGATGATGTAATCAGTAGTGTAGCGAATTTTCTGAAAAATAGTAACAGGACCAGTGTTTTTAAGAACggtgaaaagtggtataaactatttcttcaacgacatccaaacatttctgtccgcacacctgaggcagttacagcagccagtgctgctgtgtcagaaaacgatgtacggggctggtttactcaaattgaagtttaccttaaagaaaacgatttatttaatgtactttcagatccatcccgagtatttaatggcgatgagacaaactttcttctttgccccaaaacgggagtcgtattggctcctaaaggcgaaagaaatgtctacgaggtagacaatgcaccggccaaaacttcgttgactgtaatgtttacattttctgctaacggagatctcacacctccaatggttatctttccgaataagcgactatcagctgacattacatccaaagttccatcagattggggtatagggctcagcgacaacgggtggataaaagcagaagtctttcacgattacatcgagagtgtactacatcctcacttgatcaaaaaaggaattcaattccccgttatactgtttgtcgacgggcacaagacccatttgacttatgccgttagtgagttatgtaagaagttgggaattgttttgattgccttataccccaactgtaccagattactgcagccagcagacgtgtcagcattcaagccattgaaatctggttggcagaaaactgttttggagtggaggcgaaataatccaTCAATTGCTCTCACTAAGATCAATTTCGTACCGCTTCTTAATAAAACTATCAAAAACACGATCTCGTCATCAACAGTTATTAATGGATTTAGGGCAACAGGTCTTTGCCCATGGAATGTGAACGCCGTGGACTATACAAAATGTCTAGGCAAGGCAAATATTCCGCGTGCAGAAGCTATTAACAAAGCTAACAAAGAACCAAAAGCGATGACCAAAGAACAATTTAAGAATATAATTGGAGCAAAAAAATTTAATGAAATTGAACTAGGTACACTAGGACCGGAAGATAACTACTTGAAAAAAATTTATGACTTTTTCACGGAAGTGCAAACGGATTTAAACATAGACGATACTTCCAGCCAGAAAGATGCAGATATGAGATTTGATGCAATGGATATTGAAAATATGCCAGTTGTTGTAAGCGAAGACTTGAGAAAAGAGTGTTCTGATTGCGTACCTGCACCTGCCTCGGAAGTAATTATAACAGCAGAGGACTCTCACAATTCACAACAAGTTTTACATATAACTCATAAAGCAGAAGTGTATAATGCTAAGACAGAAAATACGGGAATCTCTGTTATAAGCGAAGACTTGAGAGAAGAGGGTTCTGATTGCGTACCTGTACCTGCCTTGGAAGTAATTGTAACAGCAGAAGACTTTGATGATGGAAATGATGATGGTTTATCTAACAATTCACAACAAGTTTTAAATATAACTCATAAAGCAGAAGTGTATAATGCTAAGACAGAAAATAGAAGAATCTCTGTTCTGTCCCAACAAATCAAACGCCCTATGAATACAGTGGCACAACAACAAAGCTTCGAGTTTGACAAAATAGAAAGTTATGTAGACCCAGTGCCTATAAAGGTTCAAAAACGTAACACTGCCATGTTAAACCTTACTCCCATTAAATTAACTGATGTCCTTGTACAGCCAAAATCACCTCAGCGCAAAGGCGTTAGAGACATAAAGAGAGCTCCATTTGTGTTGACTTCTGATAAATGGAGATCTATAGAGAGCGAGAAACTCCGTGTGAAACACGAAAAAGAAGAAGGCATAAAAAGAAGAAAAGAGGAAAGAGAAAAAAAGAAGTTAGAAGCAAAAACTAAACAAACTAAACCAAAAGTATCAGCAGCTAAATTGAAAATTAAGAAAGAACATGAAAGAGTTAACACAGGTGTGAAAAAACACGTGCTACTTGAAAAGTTGAATGCCGTGAATATCCTATTAAATCCACCCCAAACTGCAAATGTAGACTGTATTCCGGATGAAAAACAGGAGGACCAGGAAAATTATACTGACTATGCTTATTTAACACCAGAAGATAATGATAGAAAACAAAAAAAGATATTATACACTGCAGCTGAAATAGAGAAGTTTTTGACTGAATTTGAAGACTAA
- Protein Sequence
- MIGQELLLQSPDKTSSSGILCNSTDAEQNQERPYEMTRKRKHIPDDQTTAGSLQITEDKDERELPYELGVENYDETIANVSGHRVVDINHFFNELMKPKIKNKSSTKKSKEIRRRKIYDSETLKKALQAVKEGMSKKLAAKTYQVPRATLQYRIKNPEHQSRPGPPTILTENEEKDLEDWISLSCKKGFPKRKDDVISSVANFLKNSNRTSVFKNGEKWYKLFLQRHPNISVRTPEAVTAASAAVSENDVRGWFTQIEVYLKENDLFNVLSDPSRVFNGDETNFLLCPKTGVVLAPKGERNVYEVDNAPAKTSLTVMFTFSANGDLTPPMVIFPNKRLSADITSKVPSDWGIGLSDNGWIKAEVFHDYIESVLHPHLIKKGIQFPVILFVDGHKTHLTYAVSELCKKLGIVLIALYPNCTRLLQPADVSAFKPLKSGWQKTVLEWRRNNPSIALTKINFVPLLNKTIKNTISSSTVINGFRATGLCPWNVNAVDYTKCLGKANIPRAEAINKANKEPKAMTKEQFKNIIGAKKFNEIELGTLGPEDNYLKKIYDFFTEVQTDLNIDDTSSQKDADMRFDAMDIENMPVVVSEDLRKECSDCVPAPASEVIITAEDSHNSQQVLHITHKAEVYNAKTENTGISVISEDLREEGSDCVPVPALEVIVTAEDFDDGNDDGLSNNSQQVLNITHKAEVYNAKTENRRISVLSQQIKRPMNTVAQQQSFEFDKIESYVDPVPIKVQKRNTAMLNLTPIKLTDVLVQPKSPQRKGVRDIKRAPFVLTSDKWRSIESEKLRVKHEKEEGIKRRKEEREKKKLEAKTKQTKPKVSAAKLKIKKEHERVNTGVKKHVLLEKLNAVNILLNPPQTANVDCIPDEKQEDQENYTDYAYLTPEDNDRKQKKILYTAAEIEKFLTEFED
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00281138;
- 90% Identity
- iTF_01547480; iTF_01547481;
- 80% Identity
- -