Basic Information

Insect: Yponomeuta rorrellus
Gene Symbol: -
Assembly: GCA_947308005.1
Location: OX371022.1:7052216-7056352[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 17 6.1 4.4e+02 2.2 1.0 1 23 24 48 24 48 0.82

2 17 0.0051 0.37 11.9 0.5 2 23 75 97 74 97 0.90

3 17 0.037 2.7 9.2 1.3 2 20 120 138 119 142 0.88

4 17 0.015 1.1 10.4 1.3 1 23 147 169 147 169 0.94

5 17 0.00089 0.064 14.3 0.3 2 23 174 196 173 196 0.93

6 17 0.0038 0.27 12.3 1.6 1 23 201 224 201 224 0.95

7 17 0.00035 0.025 15.5 0.7 1 23 230 253 230 253 0.98

8 17 1.5 1.1e+02 4.1 0.1 1 8 258 265 258 274 0.80

9 17 2.4e-05 0.0018 19.2 1.6 1 23 283 305 283 305 0.98

10 17 2.5 1.8e+02 3.4 2.3 1 23 349 373 349 373 0.89

11 17 0.076 5.5 8.2 1.5 2 23 400 422 399 422 0.93

12 17 0.2 14 6.9 0.3 2 19 445 462 444 467 0.90

13 17 0.00023 0.016 16.1 0.7 1 23 472 495 472 495 0.92

14 17 0.0036 0.26 12.4 3.0 2 23 500 522 499 522 0.91

15 17 0.033 2.4 9.3 1.4 1 23 527 550 527 550 0.88

16 17 0.00051 0.037 15.0 1.9 1 23 556 579 556 579 0.98

17 17 2.1e-06 0.00015 22.6 1.5 1 23 609 631 609 631 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	17	6.1	4.4e+02	2.2	1.0	1	23	24	48	24	48	0.82
2	17	0.0051	0.37	11.9	0.5	2	23	75	97	74	97	0.90
3	17	0.037	2.7	9.2	1.3	2	20	120	138	119	142	0.88
4	17	0.015	1.1	10.4	1.3	1	23	147	169	147	169	0.94
5	17	0.00089	0.064	14.3	0.3	2	23	174	196	173	196	0.93
6	17	0.0038	0.27	12.3	1.6	1	23	201	224	201	224	0.95
7	17	0.00035	0.025	15.5	0.7	1	23	230	253	230	253	0.98
8	17	1.5	1.1e+02	4.1	0.1	1	8	258	265	258	274	0.80
9	17	2.4e-05	0.0018	19.2	1.6	1	23	283	305	283	305	0.98
10	17	2.5	1.8e+02	3.4	2.3	1	23	349	373	349	373	0.89
11	17	0.076	5.5	8.2	1.5	2	23	400	422	399	422	0.93
12	17	0.2	14	6.9	0.3	2	19	445	462	444	467	0.90
13	17	0.00023	0.016	16.1	0.7	1	23	472	495	472	495	0.92
14	17	0.0036	0.26	12.4	3.0	2	23	500	522	499	522	0.91
15	17	0.033	2.4	9.3	1.4	1	23	527	550	527	550	0.88
16	17	0.00051	0.037	15.0	1.9	1	23	556	579	556	579	0.98
17	17	2.1e-06	0.00015	22.6	1.5	1	23	609	631	609	631	0.98

Sequence Information

Coding Sequence: ATGAGAGTTAACATGAAGCTCTTGCTTGAGAACACGAACGTTATGCCCTTCAGATGGGTTAGGAACAATTACAAGTGTTTCTTCTGCATGAACACCCGCTTCAGGGAAATCGCAGACTTGAGGGCTCACTACACGACCGAACATAAACGGTTGCTCTTGCCACGCATTTTGAAGAAAGTCATAACCAGATTGAGACAAATCAGGCTAGACGTGTCGGACCTGTCGTGCAAACTTTGCTCTAAGACTTTCGATGACGTGCACAAATTAATAGATCACATAGTTGAAGAACACAAGCAAAAATACCATTCAGGACTGGAGCGCCATTTCTTCCAAGTCAAACTGAGTGAGGACGGCCTCAAGTGTTTCGATTGCGGCGAGGAATTCAACTTTTTCCAGCACCTAGTTGCGCACTCTGTCAATAAGCACGAGAAAGGGATCTTCTTGTGCTCCAGTTGCGGGAAGGGCTTCGAGTTTTACAACAAGCTCAGAGAGCACACGGACAGGCACACGGAGCCGATTAAGTGTGCGTACTGCGAGAAAACTTTCGCCAACTCCGCCAACAAAAAGGCTCACGAAGCGAGCAAACATAACGTTGGCGGGTACCCCTGCAAAGAGTGCGGCTCGAGTTTCACCTCTTTCCACAAAATGCGACTCCACGCGCTCTCCGAGCACAACAAAGGCAACCGGTACCCCTGCAAAATGTGTTCTCTCACGTTTCCGTACATGCTAAAGTTGAAGAGGCACATCCGGTCGGTGCATCTGGGTGAAAAGTACAAGTGTCCTATTTGCGACGCTCAGGTGGTGAACCTGCACGACCATATGGTGTGTCACAGCGATGTGAAACCGCATGTCTGCGAGGTGTGCCAAAAAGCGTTCGCTAGGAAGTATAACAAAGACGCCCATATGAAGACCCACCAGAAATCTGCGCGGCTTAAGGTTGAAGACGAAAAAGTGGCCTGGGAGTCACTTCTCCGGCTGAGAGCCAACTTGGGAGCGTTGCTCCGGCACACCAACGTCTTACCCTTCAGATGGGGAAGCCACACCTTCAAGTGCTTCGTGTGTCCCCACAAAGGCTTCACAGAAAGCAAAAGCATGAGGTCTCACTTCAGCGCTGAACACGCAGGCTTCAACTCGCCAAACGTTATAAGACAAGCCATACCCACATTAAAACAGATCAGGCTCGATGTGACAGACCTACGCTGCAAACTTTGCTCAGACACTTTCGACGACTTACACAAATTAACAGCGCATCTAATTCAGAAGCACAGCGTGAAATACTTCACGGGATTCGAGCGCTATTTGTTCCAAGTCAAACTGGATTGCGCCCGGCTCAAATGCTTCGAGTGCGGCGCTGAGTTTGATTTTTTCCAACAGCTTGTGAAGCACTCGGTCGACGAGCACGAAAAAAGCGTTTTCCTTTGCCACGTTTGCGGCAAAGGCTTCGAGTTTGCAGACAAGTTAAACGCTCATAGGGACGTGAAGCACGCGGCGCCGATAAAGTGTTCACACTGCGAGAAAACGTTTACCAACTTCACGAACAGGAAGGCCCATGAGGTAAAAGAGCACAAAGTTGGCGGCTACACGTGCAAAGAGTGCGGCCTGACATTCGGCAGCTTCCACAAAAGGAAACTCCACGCGATGGCCGAGCACGACCAGGGCAACCGATACACTTGCAAAGAGTGCTCCCTCACGTTCCTTTACAATAAAAAGCTGCAGCAGCACATCAGAACCGTGCATCGGAAGGAAAGGAAGACCTGTCCCATTTGTAACATTAAGGTGGTCTTCCTGCAAAAGCACATGATTTGCCACAGCGACGAGAAGCCATTCGTCTGCGAGGTGTGCCAAAAATCGTTTGCGAGGAAACATAACATAGTCGCCCATATGAAGAGGCACGAGAAATCTGCGAAATCTAGTACCTAG
Protein Sequence: MRVNMKLLLENTNVMPFRWVRNNYKCFFCMNTRFREIADLRAHYTTEHKRLLLPRILKKVITRLRQIRLDVSDLSCKLCSKTFDDVHKLIDHIVEEHKQKYHSGLERHFFQVKLSEDGLKCFDCGEEFNFFQHLVAHSVNKHEKGIFLCSSCGKGFEFYNKLREHTDRHTEPIKCAYCEKTFANSANKKAHEASKHNVGGYPCKECGSSFTSFHKMRLHALSEHNKGNRYPCKMCSLTFPYMLKLKRHIRSVHLGEKYKCPICDAQVVNLHDHMVCHSDVKPHVCEVCQKAFARKYNKDAHMKTHQKSARLKVEDEKVAWESLLRLRANLGALLRHTNVLPFRWGSHTFKCFVCPHKGFTESKSMRSHFSAEHAGFNSPNVIRQAIPTLKQIRLDVTDLRCKLCSDTFDDLHKLTAHLIQKHSVKYFTGFERYLFQVKLDCARLKCFECGAEFDFFQQLVKHSVDEHEKSVFLCHVCGKGFEFADKLNAHRDVKHAAPIKCSHCEKTFTNFTNRKAHEVKEHKVGGYTCKECGLTFGSFHKRKLHAMAEHDQGNRYTCKECSLTFLYNKKLQQHIRTVHRKERKTCPICNIKVVFLQKHMICHSDEKPFVCEVCQKSFARKHNIVAHMKRHEKSAKSST

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01544226;
90% Identity: iTF_01544226;
80% Identity: -