Yror021084.1
Basic Information
- Insect
- Yponomeuta rorrellus
- Gene Symbol
- -
- Assembly
- GCA_947308005.1
- Location
- OX371007.1:2600967-2616986[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.0023 0.17 13.0 1.3 1 23 289 311 289 311 0.96 2 12 0.0011 0.077 14.0 1.5 2 23 319 340 318 340 0.94 3 12 0.43 31 5.8 1.2 1 23 344 366 344 366 0.97 4 12 0.0015 0.11 13.6 0.9 1 23 371 394 371 394 0.98 5 12 0.0011 0.077 14.0 0.2 1 23 398 421 398 421 0.94 6 12 0.012 0.87 10.7 0.1 2 21 438 457 438 462 0.92 7 12 0.0017 0.12 13.4 1.2 3 23 472 493 472 493 0.98 8 12 0.16 12 7.2 0.4 2 23 513 535 513 535 0.97 9 12 9.7e-06 0.00071 20.4 0.5 1 23 546 568 546 568 0.98 10 12 7.2e-06 0.00052 20.9 1.4 1 23 574 596 574 596 0.99 11 12 0.00032 0.023 15.7 0.3 1 23 602 624 602 624 0.98 12 12 0.00021 0.016 16.2 0.5 1 23 630 653 630 653 0.98
Sequence Information
- Coding Sequence
- ATGGGAGACGTGAAAGTGTGTAGAGTATGTCTGGCAACAGAGGTGAAAATGTATGATTTACAGGGGTATCCGTTGGAAATCTACTTTGAGCCTATCCTTGGAATGAATCCTTTATGTTTCCTGGAGTTGCCATCATTTGCGTGCTTCGAGTGTGCGGCTCTCATAAAAAAGTACTACTTCTTCAGAGAAAAGTGTTTGAAAGGACAGTCGTATCTCTACAACATCTTACATGAACATGGCCAGATTTCAATTGAACGTGTAAAAGAAATAGACCGCGCCCACCACAAACTTGCTAGCAACCTCACCAATGTCCCAGTCACTCACGAAGACACAAAAACCGCGAGCAATCCAGTTGAAAGCATGCATCTACCCACACCAGTAAAGGATGAAGGCATTCTCACATCGGAACTTACTGATGATGGCACAGTAAAAGTTAAACTAGAAGATAACAATGATGATTACACTGGCTTGCCATCTCCCGTGGTGCCATCTAGCGATGATGACGAACCTCTGTCTCTGCACAAGAATTTAAAAGAGAAGAAAAAGAAAGGTGTTAAAAAGAAGAAAAAGGAGGTGGCGAAGAAAGAGGTGCTACCAGAAGAATTGCTGGATTGGGATCCAGCCATCGTCGGGGCAGAGTTAGCGGCAGAGATAGTGGAGGTGGTGCGCAAGCGGGGCCGCCCGCGGAAGGCCGAGCTCAAGGCGGAGGAGCCGGCAAAGGCGCGCCGCACCAACAACACCGGCGGTGTGCTCCTAGACGTCGACGACTTGGAGGAATACGTCACTGTTGTCAAACTTAGCATAGACGAGCAAATCGAGGAGATCAACAAGCGTCAGCAGTCCCGCAACTACCTGAACGCCCCCTTCCAGTGCAACCTGTGCTACAAGGGCTTCATCGATACCAGCGCCTGGAAGCACCATGTCGGAAAACACTCGCCGAGCGCCGGAGACATAGAGTGTGCTGTGTGCAAGTTCCGGTTCAAGACGAAGCGCACGTTACAGAAGCACGCTTCCAATCACGAGAAACGTTACGCCTGCAAGTCCTGCTCCAACGTTTCTAAGACCACGACTCAAGCGAAACAGCATCAGCGGTGGCATAAAGGCGTCACGTATAAGTGCCAGTACTGCGAAGAAGTCTCCACCAAATGGACGTCGTACCTCAGTCACGTGCGCATTAAACACCCGTCCGAGTTCATCTGCGGCGTATGTGGATACTCCTTCGTCAGCAAACTGGGACTCAATATGCACAAAACTATGATGCACAAGGATGTCACAGACGAGCAAGCGATACAAGACGGCGAGCCCGGCCCATACTGCGAGCAATGCGACGTGCAGTTTGTCTCCGCGGCCGCCTGGAAGCGACACATGGTCACCTCCATCAAGCACACGCGGATGGAGACTTTCAGCAACGGCTGCCGTGTGTGCGGGGACACGTTCAAGAGCGCGGAAGAGTTGCGCGTGCACCACCGCAAAGAACACGCGCGGAAGCGGCCCAAGAACTACGGGAAGAAGCCCTCCAACATGACCTGGCCTGCCAAGTGCGAGCACTGTGACGCGGAGATCCCAAATGCGCGCGAGTACTGGACGCACTTCAGAAGAGTGCACCCGGACAAGAAGTATCCCATACAGAAGAGTTACATCTGCGAGATTTGCGGCAAGAGCTTCCGGGGCAACGCGTTCCTAGTGTACCACAAGCGCACGCACTTCGAGGAGCGCTCGTTCAAGTGCGCGCAGTGCCCGAAGGCGTTCTACAACCGCACCAACCTGCAGATGCACGAGAAGACGCACAGCGAGCACCGGCCCTACCCCTGCAGCGTCTGCCTCAAGGCCTTCAAGGGGAAGGGCGCACTGGATCGCCATTTCAGAAGTCACACCGGCGAAAAACCTTACGAGTGCGAGTTTTGCGGCAAAGGCTTTGGGCAGTCCAACAGCCGCAAACTGCACGTGCGGACCGTGCATCTAAAGCAGCCAGCGCCCTACGTCAGCCGCTCGCGGCTGGAGCGACGTCGCCAAGCCACCAAGGAACCGCCCCAGCCCTTCCTCTACTGA
- Protein Sequence
- MGDVKVCRVCLATEVKMYDLQGYPLEIYFEPILGMNPLCFLELPSFACFECAALIKKYYFFREKCLKGQSYLYNILHEHGQISIERVKEIDRAHHKLASNLTNVPVTHEDTKTASNPVESMHLPTPVKDEGILTSELTDDGTVKVKLEDNNDDYTGLPSPVVPSSDDDEPLSLHKNLKEKKKKGVKKKKKEVAKKEVLPEELLDWDPAIVGAELAAEIVEVVRKRGRPRKAELKAEEPAKARRTNNTGGVLLDVDDLEEYVTVVKLSIDEQIEEINKRQQSRNYLNAPFQCNLCYKGFIDTSAWKHHVGKHSPSAGDIECAVCKFRFKTKRTLQKHASNHEKRYACKSCSNVSKTTTQAKQHQRWHKGVTYKCQYCEEVSTKWTSYLSHVRIKHPSEFICGVCGYSFVSKLGLNMHKTMMHKDVTDEQAIQDGEPGPYCEQCDVQFVSAAAWKRHMVTSIKHTRMETFSNGCRVCGDTFKSAEELRVHHRKEHARKRPKNYGKKPSNMTWPAKCEHCDAEIPNAREYWTHFRRVHPDKKYPIQKSYICEICGKSFRGNAFLVYHKRTHFEERSFKCAQCPKAFYNRTNLQMHEKTHSEHRPYPCSVCLKAFKGKGALDRHFRSHTGEKPYECEFCGKGFGQSNSRKLHVRTVHLKQPAPYVSRSRLERRRQATKEPPQPFLY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01545981;
- 90% Identity
- iTF_01544198;
- 80% Identity
- -