Yplu014751.1
Basic Information
- Insect
- Yponomeuta plumbellus
- Gene Symbol
- -
- Assembly
- GCA_947310845.1
- Location
- OX371204.1:3078938-3120153[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.0026 0.24 12.7 1.3 1 23 366 388 366 388 0.96 2 12 0.00064 0.059 14.7 2.1 2 23 396 417 395 417 0.94 3 12 0.49 45 5.6 1.2 1 23 421 443 421 443 0.97 4 12 0.0016 0.15 13.4 0.9 1 23 448 471 448 471 0.98 5 12 0.0012 0.11 13.8 0.2 1 23 475 498 475 498 0.94 6 12 0.51 48 5.5 0.0 3 21 536 554 535 559 0.89 7 12 0.0019 0.18 13.2 1.2 3 23 569 590 569 590 0.98 8 12 0.2 19 6.8 0.6 2 23 610 632 610 632 0.97 9 12 1.1e-05 0.001 20.2 0.5 1 23 643 665 643 665 0.98 10 12 3.2e-06 0.0003 21.9 1.7 1 23 671 693 671 693 0.99 11 12 0.00036 0.033 15.5 0.3 1 23 699 721 699 721 0.98 12 12 0.00024 0.022 16.0 0.5 1 23 727 750 727 750 0.98
Sequence Information
- Coding Sequence
- ATGTCCTCAAAGGGGAAAAAAAAGAAAACCACCGAATCTAATGCTTTAGATGCGATTCTTATTCGACTAAATGCAATAGAGGATAGGATAGGTGCATCGTCGACGCAGCCGCCGCCTGAGCCCCTGCTGGAAGCACCTCCATCGTTGCCACCGACGCCCACGACGTCACGTGTGGGTCGTGCACGCTCGGGAGCCGAAGTTGTAATGCATGGTGGTGGGACACCGGACACCGTGGATCCGGCTGATGTGACTGTGTCGGAGCGACGACGAGCATCGACATCGCGAGGGgacgacgtaacggacaggatcgttggcgcgttatcagcattggttcaaCCTTTATGTTTCTTGGAGCTACCATCATTTGCATGCTTCGAGTGTGCGGCTCTTATAAAAAAGTACTACTTCTTCAGAGAAAAGTGTTTAAAAGGACAGTCCTATCTCTACAACATCTTACATGAACACGGCCAGATATCAATTGAACGAGTAAAGGAAATAGACCGCAGCCAACACAGACTTGCTAGCAACCTTACCACTGTCCCAGTCACTAATGAAGACACAAAAACCGCGAACAGTCAAATTCAAAGCATCCCTGCACCTACACCAGTAAAGGAGGAAGGCATCATCACACCGGAACTTCCTGATACTTGCGCAGTAAAAGTTAAACTAGAAGATAACAATGATGATTACACTGACTTGCTGTCTCCCGTGGTGCCATCTAGCGATGATGACGAACCTCTGTCTCTGCACAAGAATTTAAAAGAGAAGAAGAAAAAGAAAGGTATTAAAAAGAAGAAAAAGGAGGTGATGAAGAAGGAAGTGCTGCCAGAAGAACTGCTGCATTGGGATCCAGCCATCGTCGGCGCAGAGTTCCCGGCTGAGATAGTGGAGGTGGTGCGAAAACGCGGGCGCCCACGCAAGGCTGAGCTCAAGGCAGAGGAGCCGGCCAAGGCGCGCCGGACCAACAACACTGGTGGCGTGCTCTTAGACGTCGACGACTTGGAGGAATACGTCACTGTTATCAAACTTAGCATAGAGGAGCAAATCGACGAGATCAACAAGCGGCAGCAGTCCCGCAACTACCAGAACGCCCCATTCCAGTGCAACCTGTGCTACAAGGGTTTTATTGACACCAGCGCCTGGAAACATCACGTCGGAAAACACTCGCCGAGTGCCGGAGACATAGAGTGTTCAGTGTGCAAGTTCCGGTTCAAGACGAAGCGTACGTTACAAAAGCATGCGTCCAACCACGAAAAGCGTTACGCCTGCAAGTCCTGCTCCAACGTTTCAAAGACCACGACCCAAGCGAAGCAGCATCAGCGGTGGCATAAAGGCGTCACGTATAAGTGCCAGTACTGCGAAGAAGTCTCCACCAAGTGGACGTCGTACCTCAGTCACGTGCGGATCAAACACCCGTCCGAATTCATCTGCGGCGTTTGCGGGTACTCCTTCGTCAGCAAGCTGGGACTCAATATGCACAAAACTATGATGCACAAGGATGTCACGTATAAGCACTCTGGTTCTAACGCCGTCAGTCCTCTGTGGCAGGCGGAGGCGGGGGCGGCGGGGGCGGTGGGGGCGGTGGGGGCGGCGGCCGGGCCGTACTGCGAACCGTGCGACGTGCAGTTCGTGTCTGCGGCGGCCTGGAAGCGCCACATGGTCACTTCCGTCAAGCACACGCGGATGGAGACATTCAGTAACGGCTGCCGTGTGTGCGGGGACACTTTCAAGAGCGCGGAAGAGCTACGAGTGCACCACCGGAAAGAGCACGCGCGGAAACGGCCCAAGAACTACGGCAAGAAGCCGTCCAGCATGACCTGGCCCGCCAAATGCGAGCACTGCGACGCGGAGATCCCAAACGCGCGCGAGTATTGGACGCACTTCAGAAGAATGCATCCGGATAAGAAGTATCCCATACAGAAGAGTTACATCTGCGAGATTTGCGGCAAGAGCTTCCGGGGCAACGCCTTTTTAGTGTACCACAAGCGCACACACTTCGAGGAGCGAACGTTCAAGTGCGAGCAGTGCCCGAAGGCATTCTACAACCGCACCAACCTGCAAATGCACGAGAAGACTCACAGCGAGCACCGCCCCTACCCTTGCAGCGTCTGCCTCAAGGCCTTCAAGGGGAAGGGCGCCTTGGACAGACATTTCAGAAGCCACACCGGAGAAAAACCGTACGAGTGCGAATTCTGCGGCAAAGGCTTCGGGCAGTCCAACAGCCGCAAACTGCACGTGCGAACAGTGCATCTCAAGCAGCCAGCACCCTACGTCAGTCGATCGCGATTAGAGAGACGTCGCCAAGCCGCCAAGGAACCGCCACAGCCCTTCCTCTACTGA
- Protein Sequence
- MSSKGKKKKTTESNALDAILIRLNAIEDRIGASSTQPPPEPLLEAPPSLPPTPTTSRVGRARSGAEVVMHGGGTPDTVDPADVTVSERRRASTSRGDDVTDRIVGALSALVQPLCFLELPSFACFECAALIKKYYFFREKCLKGQSYLYNILHEHGQISIERVKEIDRSQHRLASNLTTVPVTNEDTKTANSQIQSIPAPTPVKEEGIITPELPDTCAVKVKLEDNNDDYTDLLSPVVPSSDDDEPLSLHKNLKEKKKKKGIKKKKKEVMKKEVLPEELLHWDPAIVGAEFPAEIVEVVRKRGRPRKAELKAEEPAKARRTNNTGGVLLDVDDLEEYVTVIKLSIEEQIDEINKRQQSRNYQNAPFQCNLCYKGFIDTSAWKHHVGKHSPSAGDIECSVCKFRFKTKRTLQKHASNHEKRYACKSCSNVSKTTTQAKQHQRWHKGVTYKCQYCEEVSTKWTSYLSHVRIKHPSEFICGVCGYSFVSKLGLNMHKTMMHKDVTYKHSGSNAVSPLWQAEAGAAGAVGAVGAAAGPYCEPCDVQFVSAAAWKRHMVTSVKHTRMETFSNGCRVCGDTFKSAEELRVHHRKEHARKRPKNYGKKPSSMTWPAKCEHCDAEIPNAREYWTHFRRMHPDKKYPIQKSYICEICGKSFRGNAFLVYHKRTHFEERTFKCEQCPKAFYNRTNLQMHEKTHSEHRPYPCSVCLKAFKGKGALDRHFRSHTGEKPYECEFCGKGFGQSNSRKLHVRTVHLKQPAPYVSRSRLERRRQAAKEPPQPFLY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01543202; iTF_01544198; iTF_01545111; iTF_01546881;
- 90% Identity
- -
- 80% Identity
- -