Basic Information

Insect: Yponomeuta rorrellus
Gene Symbol: ZEB2
Assembly: GCA_947308005.1
Location: OX371023.1:1549199-1560507[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 0.00077 0.056 14.5 0.2 1 23 46 70 46 70 0.97

2 14 3.4e-06 0.00024 21.9 2.2 1 23 77 99 77 99 0.98

3 14 0.09 6.6 8.0 0.1 1 23 103 126 103 126 0.91

4 14 0.024 1.7 9.8 1.2 1 21 139 159 139 160 0.95

5 14 3.5e-05 0.0025 18.7 3.1 1 23 164 186 164 186 0.99

6 14 0.0045 0.33 12.1 0.8 1 20 195 214 195 216 0.94

7 14 0.16 12 7.2 1.5 1 20 228 247 228 251 0.87

8 14 1.6 1.2e+02 4.0 0.2 1 11 257 267 257 271 0.86

9 14 4.7e-07 3.4e-05 24.6 3.8 3 23 299 319 298 319 0.98

10 14 0.00087 0.063 14.3 0.2 1 23 325 348 325 348 0.96

11 14 0.0011 0.082 13.9 2.7 1 23 363 386 363 386 0.94

12 14 0.00011 0.0077 17.2 1.1 1 23 392 415 392 415 0.95

13 14 1.9e-05 0.0014 19.5 4.6 1 23 423 445 423 445 0.98

14 14 0.027 1.9 9.6 0.4 2 23 453 475 452 475 0.93

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	0.00077	0.056	14.5	0.2	1	23	46	70	46	70	0.97
2	14	3.4e-06	0.00024	21.9	2.2	1	23	77	99	77	99	0.98
3	14	0.09	6.6	8.0	0.1	1	23	103	126	103	126	0.91
4	14	0.024	1.7	9.8	1.2	1	21	139	159	139	160	0.95
5	14	3.5e-05	0.0025	18.7	3.1	1	23	164	186	164	186	0.99
6	14	0.0045	0.33	12.1	0.8	1	20	195	214	195	216	0.94
7	14	0.16	12	7.2	1.5	1	20	228	247	228	251	0.87
8	14	1.6	1.2e+02	4.0	0.2	1	11	257	267	257	271	0.86
9	14	4.7e-07	3.4e-05	24.6	3.8	3	23	299	319	298	319	0.98
10	14	0.00087	0.063	14.3	0.2	1	23	325	348	325	348	0.96
11	14	0.0011	0.082	13.9	2.7	1	23	363	386	363	386	0.94
12	14	0.00011	0.0077	17.2	1.1	1	23	392	415	392	415	0.95
13	14	1.9e-05	0.0014	19.5	4.6	1	23	423	445	423	445	0.98
14	14	0.027	1.9	9.6	0.4	2	23	453	475	452	475	0.93

Sequence Information

Coding Sequence: ATGAGTGTGAGTTTCACTCAGCAGAAAGCAGCACCGGCGAAGGCGACGAAACTCCGTTGGACGGTCCAGTGGGCATCCAACGAGTCCGCGCTGGCTTGGTACTCGGCGGAGAGGGACGGCGAGCCTCCCGGCGAGTTCCCGTGCGCCCAGTGCGGCCGGAAGACCTTCGCCAGCGACGCTGAGCTGACAGAACATATGAAGACCAAACATGATGAGAGCGCCGGCAACTACCAATGCAACCTCTGCAAGTATCGCTTCGACACACAATCCACTCTTCAGCAGCACATCGAGAAGCACTATCTGGTGTACAAATGCCGCATCTGCACGTACGAGAGCCGTAGTTGGAAGCCAATGCAGGCTCACTGGGCCGAGGCGCATAAGAAGGCTGTTGAAAAGGCACCGAAACAGAGTTCCTATCAGTGTAAAAGGTGTAAGGATAGTTTTGCCACGTTTCCACTCCTGCGCAAGCACAGACTAAAGTGCTCGACGTACAAGTGCGGTCAGTGCGAGAAGACGTTCAAATACCACTCGTCGTTGTACGAGCACGCTCGGATACATAAGGAGGGGGCACAGGACCAGATGTACTATTGTCAGGTGTGTGATACTCAGTTCAAGAGTGCGCGATGGTACAAACAGCACTTCAGCATCAGCTTAAAACATGTCTCTCGAGATGCCTTCAAACACGAGTGCCCGCACTGCCAGATGCGTTTCCACATCCCTCGTCGCCTGCGGGAACATGTCGGCGCTGTACACCTCAAGCACGGGATCTACGCTTGCAGTCTCTGCCCGAAGACTTACATGAGCCTGCATTTTTCCCTAGCCAAGCTGCACCTGAAGAAACATCGTGCCAAGCTGCACAACATTGGCGACGTAGTGGTCGCCCGCGACAAGATCTGCGACCACTGCGGGAAGGCTTTCACGTCCAACCACCTTCTGAACAATCACATGCGCTCTCACACCGGTGAGAAGCCGTACAAATGCCAGCTCTGCCCGGCCGCCTTCGCTCAGAACGGAACTCTCTACACGCATAACAAGAGTGTGCATCGGAAGAAGCTGAGTAAAGACGGACATACAGACTCGCCTGCTTACCAGTGCGAGGAATGCGGCAAGGAGTTCCCGACCAACTGCAAGCGGCAGGCCCACTACGAGTACTTTCATCTGAAACAGTCCAAGTTCACCTGCGAGGTCTGCAATAAGATCTTCATGTCCTCGACGTCGCTCAAGAACCACAATGCGACCCGGCACGGGATGCTCTCTAGCAAAAGTTTCAACTGCGACACTTGTGGGAAGAGGTTCAATACGTCCTCAGCGCGCTGTAACCACATGAAAACCCACCTGGCAGATGGCAGCGGACTGAAATGTCGTTCCTGCGACGCCGAGTTTAAAAACCCTGGCGCCCTCTATATGCATTTTAAACTCAAACACCTGAAGCTAAAACGGAGCGATAAAGTCAGTATCAAGAACCTGTGCAAGTCTGACAAGGAACTGATTGTGAACAGGGATCCGCAGTGA
Protein Sequence: MSVSFTQQKAAPAKATKLRWTVQWASNESALAWYSAERDGEPPGEFPCAQCGRKTFASDAELTEHMKTKHDESAGNYQCNLCKYRFDTQSTLQQHIEKHYLVYKCRICTYESRSWKPMQAHWAEAHKKAVEKAPKQSSYQCKRCKDSFATFPLLRKHRLKCSTYKCGQCEKTFKYHSSLYEHARIHKEGAQDQMYYCQVCDTQFKSARWYKQHFSISLKHVSRDAFKHECPHCQMRFHIPRRLREHVGAVHLKHGIYACSLCPKTYMSLHFSLAKLHLKKHRAKLHNIGDVVVARDKICDHCGKAFTSNHLLNNHMRSHTGEKPYKCQLCPAAFAQNGTLYTHNKSVHRKKLSKDGHTDSPAYQCEECGKEFPTNCKRQAHYEYFHLKQSKFTCEVCNKIFMSSTSLKNHNATRHGMLSSKSFNCDTCGKRFNTSSARCNHMKTHLADGSGLKCRSCDAEFKNPGALYMHFKLKHLKLKRSDKVSIKNLCKSDKELIVNRDPQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01545953;
90% Identity: iTF_01545953;
80% Identity: -