Yror015230.1
Basic Information
- Insect
- Yponomeuta rorrellus
- Gene Symbol
- Snai1
- Assembly
- GCA_947308005.1
- Location
- OX371010.1:19138009-19139397[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 4.9e-05 0.0036 18.2 2.0 2 23 146 167 146 167 0.97 2 11 0.00033 0.024 15.6 1.9 1 23 173 196 173 196 0.95 3 11 1.5e-05 0.0011 19.9 0.3 1 23 209 231 209 231 0.99 4 11 1.6e-06 0.00012 22.9 0.2 1 23 237 259 237 259 0.97 5 11 7.6e-05 0.0055 17.6 9.3 1 23 265 287 265 287 0.97 6 11 6.3e-06 0.00045 21.0 1.1 1 23 293 315 293 315 0.98 7 11 9.7e-06 0.00071 20.4 0.6 1 23 321 344 321 344 0.97 8 11 0.0088 0.64 11.1 0.2 5 23 350 368 349 368 0.96 9 11 0.041 3 9.0 1.0 2 23 375 397 374 397 0.94 10 11 0.79 57 5.0 0.6 1 23 403 428 403 428 0.88 11 11 8.7e-06 0.00063 20.6 0.4 1 23 434 457 434 457 0.95
Sequence Information
- Coding Sequence
- ATGGACCTCAAAATATGCCGACTATGCTGTGCAAACTCTGGCACTATCCGCCTCTTCGATGGCGAAGGGGAATTGGCGAGACAGCTAATGTATTTGTGTGTGAGAATCTCGGTCGCCGAAGGTGATGGTCTGCCAGCGAAGATATGCATTGGCTGTGAGTCGGAGCTTGCCCGCTGCAGCCAATTTGTTCTTCAAGCAGAAGCCTCGGACCGCAATCTATGGAAAACCTTGGAGGAAACACTGCATGTAAAGAAAGAACAAGAGGAAACTAAGTATGCACCTTACGGCTCCTACCGCGATGAATTCGACAGTCCCGACTTTTCATCATCACCAATTCAGGTGGAAACAAAACCAATTGGAATCAAACAGGAAAATAATGATGTGACTGAGAGTTCTAAAAAGAGGATATTTAGGAGTAAAAAAGTTAAGTCAAATGTATGCGCAATTTGTGGTCGCGTCTGTACGAACCGCTGTGCACTCGTTAGCCATATGAGGATGCACAATAATGAGAAACCTCATATTTGCCCACACTGCAGTAAGCAATTTAAGGCAAAGGGATCCCTGAAGGGACATATAGAGAGAGTTCATAAAGAAGGAGCAAGTTCACAAGGGAAAATGAAAAAATATGTGTGTGAAACTTGTGGAAAGATCATTAGCAGAAAATACAATATTGATATTCATATGAGAACACATACTGGCGAAACTCCATACTCATGTCCAATATGCCCTGCAAAATTTAAACAACAGAGTTCTCTTATACGACACGAAGCTCGCCATTCAGGCACTAAACCATTTCACTGCAGCTCTTGTAACAAATGTTTCAGCACCAAAGACCAGCTACGCACCCACATGCATGTCCACACAACTGAAAAAAAATACACATGCCCTATCTGCCAGGGCCAATTTAAGTATCAGAATAACCTGACGAAGCATATAAAGCTCCATGATCAACAAAGCAACTTTGTATGCAACTACTGTGGCCGTTTGTTTAGAGCTAAAGGGAATCTCAAATCACACATAGAGAAACAGCATTCAGAGCGTTCAGGGCAATGCAATATTTGCTTTAAGACTGTTCCTAACATTGAAGTCCACATGCGGAAGCATACAGGCGAAAGGCCATTGAAATGTGAGCTGTGTCCGAGTACTTTCTTTGAGCAAAATGGCTTAGCTCACCACATAAACTTTAGACATAAAAATCAAGATAAATACAAGTGTCTGTACAAAGGATGCACCGAGTCATTCCCTTCCCAGCCAATGCTGGACTTCCACCAATCCAAGCTGCACACCGGCACACTGCCGTTTACCTGTGAGCGCTGTCCGCGGGCCTTCTACAGGAAGAATGATCTAGCTCGCCATATGATAGGAACTCATAAGGAGAGACTTAAATGA
- Protein Sequence
- MDLKICRLCCANSGTIRLFDGEGELARQLMYLCVRISVAEGDGLPAKICIGCESELARCSQFVLQAEASDRNLWKTLEETLHVKKEQEETKYAPYGSYRDEFDSPDFSSSPIQVETKPIGIKQENNDVTESSKKRIFRSKKVKSNVCAICGRVCTNRCALVSHMRMHNNEKPHICPHCSKQFKAKGSLKGHIERVHKEGASSQGKMKKYVCETCGKIISRKYNIDIHMRTHTGETPYSCPICPAKFKQQSSLIRHEARHSGTKPFHCSSCNKCFSTKDQLRTHMHVHTTEKKYTCPICQGQFKYQNNLTKHIKLHDQQSNFVCNYCGRLFRAKGNLKSHIEKQHSERSGQCNICFKTVPNIEVHMRKHTGERPLKCELCPSTFFEQNGLAHHINFRHKNQDKYKCLYKGCTESFPSQPMLDFHQSKLHTGTLPFTCERCPRAFYRKNDLARHMIGTHKERLK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01543174; iTF_01544173; iTF_01545084; iTF_01545948;
- 90% Identity
- iTF_01545948;
- 80% Identity
- -