Basic Information

Insect: Yponomeuta cagnagella
Gene Symbol: Snai1
Assembly: GCA_947310995.1
Location: OX371283.1:19523677-19525068[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 5e-05 0.0036 18.2 2.0 2 23 147 168 147 168 0.97

2 11 0.00033 0.024 15.6 1.9 1 23 174 197 174 197 0.95

3 11 1.5e-05 0.0011 19.9 0.3 1 23 210 232 210 232 0.99

4 11 1.6e-06 0.00012 22.9 0.2 1 23 238 260 238 260 0.97

5 11 7.7e-05 0.0055 17.6 9.3 1 23 266 288 266 288 0.97

6 11 6.3e-06 0.00045 21.0 1.1 1 23 294 316 294 316 0.98

7 11 9.8e-06 0.0007 20.4 0.6 1 23 322 345 322 345 0.97

8 11 0.0089 0.64 11.1 0.2 5 23 351 369 350 369 0.96

9 11 0.042 3 9.0 1.0 2 23 376 398 375 398 0.94

10 11 0.79 57 5.0 0.6 1 23 404 429 404 429 0.88

11 11 8.8e-06 0.00063 20.6 0.4 1 23 435 458 435 458 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	5e-05	0.0036	18.2	2.0	2	23	147	168	147	168	0.97
2	11	0.00033	0.024	15.6	1.9	1	23	174	197	174	197	0.95
3	11	1.5e-05	0.0011	19.9	0.3	1	23	210	232	210	232	0.99
4	11	1.6e-06	0.00012	22.9	0.2	1	23	238	260	238	260	0.97
5	11	7.7e-05	0.0055	17.6	9.3	1	23	266	288	266	288	0.97
6	11	6.3e-06	0.00045	21.0	1.1	1	23	294	316	294	316	0.98
7	11	9.8e-06	0.0007	20.4	0.6	1	23	322	345	322	345	0.97
8	11	0.0089	0.64	11.1	0.2	5	23	351	369	350	369	0.96
9	11	0.042	3	9.0	1.0	2	23	376	398	375	398	0.94
10	11	0.79	57	5.0	0.6	1	23	404	429	404	429	0.88
11	11	8.8e-06	0.00063	20.6	0.4	1	23	435	458	435	458	0.95

Sequence Information

Coding Sequence: ATGGACCTCAAAATATGCCGACTATGCTGTGCAAACTCTGGCACTATCCGCCTCTTTGATGGCGAAGGGGAATTGGCGAGACAGCTAATGTATTTGTGTGTGAGAATCTCGGTCGCCGAAGGTGATGGTCTGCCAGCGAAGATATGCATTGGCTGTGAGTCGGAGCTTGCCCGCTGCAGCCAATTTGTTCTTCAAGCAGAAGCCTCGGACCGCAATCTATGGAAAACCTTGGAGGAAACACTGCATGTAAAGAAAGAACAAGAGGAAACTAAGTATGCACCTTACGGCTCCTACCGCGATGAATTCGACAGTCCCGACTTTTCATCATCACCAATTCAGGTGGAAACAAAACCAATTGGAATCAAACAGGAAAATAATGATGTGACTGAGAGTTCTAAAAAGAGGATATTTAGGAGGAGTAAAAAAGTTAAGTCAAATGTATGCGCAATTTGTGGTCGCGTCTGTACGAACCGCTGTGCACTCGTTAGCCATATGAGGATGCACAATAATGAGAAACCTCATATTTGCCCACACTGCAGTAAGCAATTTAAGGCAAAGGGATCCCTGAAGGGACATATAGAGAGAGTTCATAAAGAAGGAGCAAGTTCACAAGGGAAAATGAAAAAATATGTGTGTGAAACTTGTGGAAAGATCATTAGCAGAAAATACAATATTGATATTCATATGAGAACACATACTGGCGAAACTCCATACTCATGTCCAATATGCCCTGCAAAATTTAAACAACAGAGTTCTCTTATACGACACGAAGCTCGCCATTCAGGCACTAAACCATTTCACTGCAGCTCTTGTAACAAATGTTTCAGCACCAAAGACCAGCTACGCACCCACATGCATGTCCACACAACTGAAAAAAAATACACATGCCCTATCTGCCAGGGCCAATTTAAGTATCAGAATAACCTGACGAAGCATATAAAGCTCCATGATCAACAAAGCAACTTTGTATGCAACTACTGTGGCCGTTTGTTTAGAGCTAAAGGGAATCTCAAATCACACATAGAGAAACAGCATTCAGAGCGTTCAGGGCAATGCAATATTTGCTTTAAGACTGTTCCTAACATTGAAGTCCACATGCGGAAGCATACAGGCGAAAGGCCATTGAAATGTGAGCTGTGTCCGAGTACTTTCTTTGAGCAAAATGGCTTAGCTCACCACATAAACTTTAGACATAAAAATCAAGATAAATACAAGTGTCTGTACAAAGGATGCACCGAGTCATTCCCTTCCCAGCCAATGCTGGACTTCCACCAATCCAAGCTGCACACCGGCACACTGCCGTTTACCTGTGAGCGCTGTCCGCGGGCCTTCTACAGGAAGAATGATCTAGCTCGCCATATGATAGGAACTCATAAGGAGAGACTTAAATGA
Protein Sequence: MDLKICRLCCANSGTIRLFDGEGELARQLMYLCVRISVAEGDGLPAKICIGCESELARCSQFVLQAEASDRNLWKTLEETLHVKKEQEETKYAPYGSYRDEFDSPDFSSSPIQVETKPIGIKQENNDVTESSKKRIFRRSKKVKSNVCAICGRVCTNRCALVSHMRMHNNEKPHICPHCSKQFKAKGSLKGHIERVHKEGASSQGKMKKYVCETCGKIISRKYNIDIHMRTHTGETPYSCPICPAKFKQQSSLIRHEARHSGTKPFHCSSCNKCFSTKDQLRTHMHVHTTEKKYTCPICQGQFKYQNNLTKHIKLHDQQSNFVCNYCGRLFRAKGNLKSHIEKQHSERSGQCNICFKTVPNIEVHMRKHTGERPLKCELCPSTFFEQNGLAHHINFRHKNQDKYKCLYKGCTESFPSQPMLDFHQSKLHTGTLPFTCERCPRAFYRKNDLARHMIGTHKERLK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01546855;
90% Identity: iTF_01545948;
80% Identity: iTF_01545084;