Yror007713.1
Basic Information
- Insect
- Yponomeuta rorrellus
- Gene Symbol
- -
- Assembly
- GCA_947308005.1
- Location
- OX371022.1:7382496-7386060[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 23 0.89 65 4.8 0.3 2 22 31 51 30 53 0.88 2 23 0.0012 0.086 13.9 1.7 1 23 119 141 119 141 0.96 3 23 0.0051 0.37 11.9 0.5 1 23 145 168 145 168 0.95 4 23 0.014 1 10.5 0.5 1 19 174 192 174 198 0.92 5 23 4.6 3.4e+02 2.6 0.0 2 16 203 216 202 218 0.79 6 23 0.54 39 5.5 0.3 2 22 249 269 248 271 0.89 7 23 0.00085 0.062 14.3 0.1 2 23 297 319 296 319 0.94 8 23 1.6 1.2e+02 4.0 0.2 1 14 340 353 340 362 0.74 9 23 0.002 0.15 13.2 0.4 1 23 366 388 366 388 0.94 10 23 0.016 1.2 10.3 0.2 5 20 396 411 393 413 0.89 11 23 3.9 2.8e+02 2.8 0.3 3 23 422 443 420 443 0.88 12 23 0.27 19 6.5 0.4 1 23 450 473 450 473 0.95 13 23 0.11 8.2 7.6 0.5 2 23 478 499 477 499 0.94 14 23 0.00025 0.018 16.0 1.3 1 21 505 525 505 530 0.94 15 23 0.27 19 6.5 0.4 2 23 578 600 577 600 0.94 16 23 0.0035 0.26 12.4 0.1 2 23 627 649 626 649 0.93 17 23 0.039 2.9 9.1 1.7 1 23 670 692 670 692 0.95 18 23 0.0018 0.13 13.3 0.1 1 23 696 718 696 718 0.97 19 23 0.0014 0.099 13.7 0.2 3 21 724 742 722 743 0.92 20 23 2 1.5e+02 3.7 0.7 2 20 751 769 750 773 0.77 21 23 0.0042 0.31 12.1 0.2 1 23 780 803 780 803 0.95 22 23 5.6e-05 0.0041 18.0 1.7 2 23 808 829 807 829 0.97 23 23 4.1e-05 0.003 18.5 1.4 1 21 835 855 835 860 0.94
Sequence Information
- Coding Sequence
- ATGAATGTTTGCGCAAAGTCTCCATCGCTGTCCTGCGCGACCTCCCGTAGACTGGAGCTCGCGCAGATCAAAGGGTCCTCGCACAATATCGAGTGTTGCTATTGCTCCGGAGTATTCGATGACCCCGAGCGGTTCAGATGGCACGTAGACGATTCGCACTCTGACGTGGACAGATCTCTCGTACACCACAGATGGATCACCCCGCGGGTCGATATCACCAATCTGCGTTGTAGGCTCTGCTCACAGCCGATGGAGACGTTAGACAAGCTTGTTGAACACTTCAAATCTGGACACGGCATGAAGATTCAGTCTAAACCTTCCGCGATAGTGCCAATGAAACTAAATAAGGATCTGTACGTTTGTCTTATCTGTAGCAAGCGATTCTCGGAACGTTTTAGCCTCTTTAAACACTCTGGAACACATTTCGGGAGTTACATATGTGACGCGTGCGGTAAAAATTACCAAACCAAGTTCGGCCTTAGAGTTCACACGGAGAAGCAACACGCCAACGCAGGGAAGTTTATTTGTGCAAAGTGCAAGGAATTGTTTGATACTAAGGAGGAACTGAAAAAGCACGGAATTGAAACCAAGCACGGCTTGGCGTCGGTTTGTCCAATATGTGACGATAGGTTCACCTCTGGAAACCTGATTGCCGGTGATGCCGCTCTGGAGACAGCCTGTTTCATACTAAAGCATTCCACGGCCTACCCCTTTGGGATACAACGGAATCTTCCGAACAAGATTCAATGTTGCTATTGTGATATATTTATCGGTGACCCCGTGCAGTTTCGACGGCACGTCGATGACGAGCATTCGAATGTCGACCGATCGCTCTTGAACGTCAAACGTTCGAAGCAGGCGGCTACCAGGGTCGATATCACAGATCTCAGATGCCGACTTTGCCCTAAGCCTTTCGAAACGTTAGAGCAGCTAGCTACCCACTTGAAAGACGCTCACGATATGACACTGCAGACAGAGGTTACCGGGCTCGTGCCAATGAAATTAGAGAAGGATCGCTACATCTGCGTTACTTGTAATAAAAAATTCGCCGGCCTGACGATACTGTACATACATTCGGGTACACATTTCGCGCGGTACATCTGCCATACATGCGGCAAGAACTTTGAGACCCGCGGCGGGGTCCAGGGCCACGCCGCGAAACACATTAATAAGATAATCTGTATCAAATGTAAGGAAGTATTCGAGACTAAGGACGAATTGAAAAAGCATAAGCTCGTGAGTAAGCGCTGTCAACCGATGGCCTGCACATTGTGCGTCGAACGATTCACTTGTTGGGAACGCCTGCAGGTTCATCTAGTGGAAGTGCACAATAAGCCCAAGAAAAACTTCCCGTGTCTGGAGTGCGGTGACGTATTCGAGACTCGGGTCTCCCGGTACAAGCACTTCAAATCTGCTCACACTGACGAGCTGAAGTGCATCTACTGTGAGAAGAAATACGGCATTAAGCGAGACTTGGATGACCACATGAACACTCACACGGGCGAGCGGCCCTACAAGTGTAATGAGTGTGATAAATCGTTCAACGCGCTGAAGAGATTGAGGAAACATCAGGCCTCGAAGAGGGTACACGCCCACCTGAAGGAAATTGTCCAAGATCCGTCTATTGCGGACCTGTTCGTCGCTGGTGCCGCGGCGGAGTCGGCCGGTCTTATTCTAAATAACTCGACGGCATATCCTTTCGCGCTTCGAACCAGGCATCCGAATAAAATACAATGTTGCTACTGCGAGAAACTGATCTCCGACCCGGTACAGTTCAGGGAGCATGTGGACATGGAGCATGCCACGCTTTTGGACCGCTCCGTGCTCAAATATAAGCGCGCGCAACAGTCCGCCACGCGGGTCGACATCACAGACCTCCGGTGCCGACTCTGTCCCAAACCCTTCGAAAACTTAGAGCTATTAGCGACCCACTTAATAAATTTCCACAAAATCAACCTTACCACTATAGAATCTGGCCTCGTACCAATAAGACTAGAGAAGGACCGTTACGTTTGCGTCACGTGCCATAAGAAATTCTCTGGTCTCACCATGCTTTACCTACACTCGGGCACGCACAATGCGAGGTATATCTGCCACACTTGCGGCAGAAACCTCGAGACCGCCGGCGGCCTGCGAGCCCATGCTATACGACATTTGAACAAGATTATCTGTCTCAAGTGCAAAGAGGTGTTCCCTTCGAAGGAGGAACTGAAAAAGCACAAACTTACGAGTAAAAAGTGTTTACCATCCGTCTGCAAGATTTGTCAGGAGCGGTTTACGTGCAGGGAGCGGATGGAGATCCACCTCGTCGAAGCACACAATCAGCCGAAAAAGTTTTTCCCTTGTTCAGAATGCGGGGAGGTTTTCGAATCGCGCGTCGCACGCTATAAGCATTTCAAGTCTGCGCACACAGACGATCTGAAATGCAAGTACTGCGAAAAGCGGTACGGAACGAAGCGTGACCTAAGCGATCACATGAACAGTCACACGGGGGAAAGACCTCACAAGTGTACGATATGCGAAAAGACTTTTAGTGCTAGTAAGAAATTACGCAAGCATATGGCATCGCCGAGGGTGCACGCCCATCTCAAGATCGCTTAA
- Protein Sequence
- MNVCAKSPSLSCATSRRLELAQIKGSSHNIECCYCSGVFDDPERFRWHVDDSHSDVDRSLVHHRWITPRVDITNLRCRLCSQPMETLDKLVEHFKSGHGMKIQSKPSAIVPMKLNKDLYVCLICSKRFSERFSLFKHSGTHFGSYICDACGKNYQTKFGLRVHTEKQHANAGKFICAKCKELFDTKEELKKHGIETKHGLASVCPICDDRFTSGNLIAGDAALETACFILKHSTAYPFGIQRNLPNKIQCCYCDIFIGDPVQFRRHVDDEHSNVDRSLLNVKRSKQAATRVDITDLRCRLCPKPFETLEQLATHLKDAHDMTLQTEVTGLVPMKLEKDRYICVTCNKKFAGLTILYIHSGTHFARYICHTCGKNFETRGGVQGHAAKHINKIICIKCKEVFETKDELKKHKLVSKRCQPMACTLCVERFTCWERLQVHLVEVHNKPKKNFPCLECGDVFETRVSRYKHFKSAHTDELKCIYCEKKYGIKRDLDDHMNTHTGERPYKCNECDKSFNALKRLRKHQASKRVHAHLKEIVQDPSIADLFVAGAAAESAGLILNNSTAYPFALRTRHPNKIQCCYCEKLISDPVQFREHVDMEHATLLDRSVLKYKRAQQSATRVDITDLRCRLCPKPFENLELLATHLINFHKINLTTIESGLVPIRLEKDRYVCVTCHKKFSGLTMLYLHSGTHNARYICHTCGRNLETAGGLRAHAIRHLNKIICLKCKEVFPSKEELKKHKLTSKKCLPSVCKICQERFTCRERMEIHLVEAHNQPKKFFPCSECGEVFESRVARYKHFKSAHTDDLKCKYCEKRYGTKRDLSDHMNSHTGERPHKCTICEKTFSASKKLRKHMASPRVHAHLKIA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01544174;
- 90% Identity
- iTF_01544174;
- 80% Identity
- -