Yror018106.2
Basic Information
- Insect
- Yponomeuta rorrellus
- Gene Symbol
- -
- Assembly
- GCA_947308005.1
- Location
- OX371002.1:15152677-15166926[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 24 0.014 1 10.5 1.0 3 23 694 715 693 715 0.96 2 24 4.8 3.5e+02 2.5 1.1 4 23 1084 1105 1082 1105 0.84 3 24 0.041 3 9.0 0.3 1 21 1110 1130 1110 1131 0.96 4 24 5 3.6e+02 2.5 0.3 1 23 1173 1196 1173 1196 0.84 5 24 0.19 14 6.9 0.8 3 21 1207 1225 1205 1226 0.93 6 24 1 73 4.7 0.1 2 23 1234 1256 1233 1256 0.89 7 24 0.0098 0.71 11.0 0.4 3 23 1276 1297 1274 1297 0.95 8 24 0.11 8.3 7.6 1.0 1 23 1303 1326 1303 1326 0.93 9 24 0.14 11 7.3 0.0 1 23 1351 1374 1351 1374 0.90 10 24 0.022 1.6 9.9 3.4 1 23 1379 1401 1379 1401 0.97 11 24 0.32 24 6.2 0.1 1 23 1407 1430 1407 1430 0.95 12 24 0.0026 0.19 12.8 1.3 1 23 1443 1465 1443 1465 0.97 13 24 0.00021 0.015 16.3 1.8 1 23 1513 1536 1513 1536 0.97 14 24 0.0056 0.4 11.8 1.9 1 23 1600 1623 1600 1623 0.96 15 24 0.0038 0.28 12.3 1.5 2 23 1656 1678 1655 1678 0.95 16 24 0.17 12 7.1 0.0 2 23 1684 1706 1683 1706 0.95 17 24 0.091 6.6 7.9 0.1 1 21 1750 1770 1750 1771 0.94 18 24 0.00053 0.039 15.0 0.6 1 23 1781 1803 1781 1803 0.94 19 24 0.00013 0.0094 16.9 0.3 2 23 1892 1914 1892 1914 0.93 20 24 1.6e-07 1.2e-05 26.0 1.3 3 23 1921 1941 1920 1941 0.98 21 24 0.19 14 6.9 0.2 3 23 1961 1981 1959 1982 0.94 22 24 0.14 10 7.4 0.0 1 23 2004 2026 2004 2026 0.97 23 24 0.0058 0.42 11.7 0.4 1 23 2032 2055 2032 2055 0.95 24 24 0.00029 0.021 15.8 0.4 1 23 2064 2087 2064 2087 0.96
Sequence Information
- Coding Sequence
- ATGAGTGTGATTTATGATCATGTTTGTAGACTGTGCTTGTCATCTCGAGGCGAATTACTGCCGATTTTTCGTACCACCAGTTCTGACGGTACGGAACCCCCCGTCCTGGCATCAAAAATCAAGGATTGTGTGGCTGTCCAGATAAACGAGAATGACGACCTGCCGACGCGTGTCTGTAGGAAGTGCGTCGACAACGTGAATAACTGGCACATATTTAAGAAAGTGTGTGAGAGGACCCAAAACAAACTTCAATCTTTGGCAAAAAAAGATGGCAGCCAACTAGAAGAGGTCAAAATAAAAAGTGAACCCCTGAATGATGAACTTTATGATGATGGAGTGGTCATTGATGGCTCGTATCCTGGTCTGGAGCAGAATGCCACTTCTTCAAGCAAACTCCAGCCAGAAGGCCCTCCAATCTTGGCATCATTGGGGCTTACACCGAGGAGTGATAAGAACTGTGTGGATCCACGAATGGATTGGCATCGGGTCCATGCTATATTGGACATGGTTCAAGATGATGAGGTCATTGATACTCTGCAGAATTTCGAGGAATGTGATGTTCTACATAAATCTGAACACGGGTCTGATACAGAAATGGAACTACTTTCTGATATTGATGATGAATTTATTGACTGCAAAGTTGGTTACAAAGGTAGAGATAAAACCATCCTGTCTAAAGATCCAAAAATATCCCATTCTGATACTAAATCAAAAATAAAGCAATCATCTGCATTACTTATCAAAAAATTTGAAAGTGTTAATGCGAAACACTTTCCACAACCTCTTGATGCTTGGCAGAATTTTTTTAGCGATGATATTTTAGAACTCATCGTTGAATCCACTAATGCGATTATCATCAAAAGAGGACTTGAAGTTTCTTCCAACACCACAATACAAGAAATCAAAGCTTTCTTTGGAATCCTGTATCTCCATGGGATCACGAGACCAGTTTACCAAAAACGAAGTGAGCTTTGGAACGAAAAATATGGAATAGCAGGTGTAAAACATACCATGAGCCATGACCGATTTAAGTTCCTGCTTGGTAATTTATGTTTTGATATTGAAGATGATGATGAGAGTATGCCACAGTTTGACACCATGAAGCGTATGCGAAAAATATTTGAAATCTTTGCGATGAACTGTAGAACAATGCATCACATTGAAAATGTTGCAGTAATTGATGAGATCATTGTGCCAGTCTTTGGACCATGTCCATTCCGATATGACATTGATAAGAAGCAGTTAAAGAAAGGCATTAAATTGGTATTGCTTGTGGATCCAAATAGTTTTTTTGTCAGTAACTTGGATGTGATTATCGATCCATACTTTGGTCCAGACGAAATTGTAAAGAAGTTGGTACATCATCTTGCTGGTACTGGAAAAACTATAGTTATGGACAGTTGGTACACGACAGTCAGTTTAATGGAGACACTCAAAACAGAATATCAGCTGTACAGCATCGCAGCATTAAGTAATGACAGTGGGGTCATACCTCCAGTTTTCCTGTCAAATCTGAGGAAATCTGGAGCATTAATGACTGGCTTTCTTGATCGAGACACATCTTTGTCTTCTTACGTAAACAGTGCGTCGAAGTCAGTCAATGTTTTGACCAATCATCCAAAGTATTACAAGAAAGGTCATGTAAGCCATGCAACGCCCGTGTCAGCTTACAAAAAGAACCAATCAGCAGTAGAAGTAGTGGATGTTCTGATGCATTATTACACAACTATGCAGTATAGCAATGACTGGACGATGTCTATATTGTTCACGCTGTTGAATATCGCCTCAGTAAATGCTCAAGTGCTGTGGGGTACACAGTACACCAGCAATCTAATACAGAGGCGTGTATTTATAAGAGAGTTGGCATTTGGTCTTATGGCGCACAGTTACAAACGGGTCAAGCAGCCTCTGCTGGGCGTCGAGAGCGAGAAGGAAGAGATAGACTACGAGGAGGAGGTAAATGAGCCCAAACAATTTGAGAAAGTTTCCAACATTCCTGAGGTATCAATTACCGTCATGCGTCCTACCGGGGAGACCCTGCAACCGCGTCAGGGATTTCAACAACTAGCGTCTAAGAATTGCCTCATTTGCGACCGCGCGTACCGGTACTCGCACAATGCCCGCCGCCATGAGCTCACCGCGCATAGCTTCGATCGGTACACAAACAAAGTGACAAACAAAAAACACCCACTTGCACACATGCAACCCAAACTGCGCCCCAACCCGTTCAATCCTAAAGCGCGTCTTATGCCAAACCCAATCAGCCACAAAATGCAAAAAATACAACTGCGCCCCAAATCAATGCCCAGCAAAATGGTGCCGCATAAGGTTATCCCTAAACCTGTGCCGATCAAGGCTGCGCCTATGAAACAAGCACAAAACAACTTGCCGTACCCTCTTAGAATTAAGGCGCTGAAAGACTTGCAAATTAAGAAGAAGGAACCACAAATCCTTAAGACTCTTCTAACATCTAAGCCTGAGGTCTTGGTGGCTGAGCCAGAAATCGTCAACTCTGGCCCAGGGAGTCCCGAAACATTAATTTCCGAGCCAGAAATCGCGTCATTCCAAGTGGAAGCTATCTTATCTGAGCCGGACGGCTTCGACGGACAACATGGAGAAGAAGAAAGTGAGAGAGATACTCATGTGAATAACCAAGGTGCGTATGATAATGTCGACATGGAGTCTGACAATGAAATCGAGATCGCGCACCAGCGGGATGAAGAAATTACTGACAGACTACATATTGACGAAGAAGACGGCGAAGAAAGGATGAGCGAAAACGAAAATAACGCGGACGACAGTCAAATGTATGATTATGAAAATCAAGAAGAAAATCAGGAAGACGAAGAAGCAGATGGTAACGAAGACGCAGAGATGGATGAAATATCTGAAGCGAAAGCTGATGATGAAGGCAAAGATGGCGATAACATAAATGAAGATGGAGGTGCAGAGTACCACGAAGTAAATCCCGATGATAACGATGAAGACATGGACGATGAAGAAGATGCGGCGCCCCTCGGCCTTGCACCCGTCGTGGAGATCAACGAAGAACAACACACTAATGACAGCGAAATCCACGAAGAGGATGTTGAGGAAGACGATGAATTAGACGAATCGGCCGATGCCAATGACACCGTTGATGGCACGGCGCAGGAAATTGACCCTGACAAGATATACGTCACCAAGACTCAAAGGGATTTCATACTCAAGTACCGCGATGTTATTCAGCAAATTAACACCAAACGCTGCCTTTGTTGCGATAAAGAATACCCGCGTCGCAAAGCCGTTATACAACATCTGCAGAAAAATGGACACAAGGTTCCCAAGCACACATGCTACAATTGCGTCATCACTTTCAGCCACATCGGCGCGCTACTCAGCCACATGCGGGCAGATGTGTGCACAAACCTTTGGAAGGTTATTTACAATGAAAACGGCATAACTGACGACATGATTGTTGAAGATGAACCTAAAGATAATAAGGTCCAGTATAAGGATATTTTTAATGCGAGATCCTACGCATGCAAACTGTGCCCGGCTAAATTCCAATTGAAACAGTTCATTACGAAACACGTCCTTGATGTTCACGAAGATGGACAATCTCTTGTGACCTTGGCGTGTGTTCACTGCCGGTCACGGTTCAAAGACAAGGGTCTCTGGAAGAAGCATGTACGCAATGGGGAGTGCACCATTTATATTTCGTGCGATCTATGCTCAGAGAAGTTCGGCAATGTGCAGGATTTCAACAACCACGCCTTGGCCGTGCACGCCGGGAGTTTTGATCCTGAAAACCAGTCCAAGTGTGTCGATGGTCGACCGACTGATTGCCCATTATGCGAGAAGAAGTTGGCTACCTACCAGAACTTGGTCAAACATCTGAAATTATTCCACGATGAAGACAGACCGCATTACTGTCAAAACTGTGATTCCAAGTATGAAAAGGCTGAGGAATTGAACAATCACATTTATTTGGAACATTCAGATAAGGCTATGGGTATCAAGTCTGAGATCGATATGTCTATCGTCAAAGAAGAAGCTGAAGAATATCACTACTCATGCACTGAGTGCAACGCTATATTCGAGACTGTCGATGCTTGGACCGACCACCAAGTTGCGGAACATAATCAAGTGGCTCACCACTGCGACCAGTGCGAGAAAAAATTCTTGCGTCCGTCTGAGCTCGCCGAGCACAAGAACACACACTTGCGAGTGAAGCTCTATCCTTGCAGCATCTGTGCAGATTCTTATAGTACCCCGCAGAAACTATCGGACCATGTGCAGCAAGCGCATCCAGATGCCTCCGTGTACGCTGCAGCCGAGACAGAGTTCTTCTGCGAAATCTGCATAAGGTCGTTCAAGAGTCGTCAAGCGTACTCCAATCATATGCGCATTCACGCCAAAGTGCCCACGACCAACAGAAAACCCGGCGAAAAAGGATTCGCGCCACAAATAGTCGGCAAACCCATCAAACAATTCCCGATTGTGCAACCTGGAAATGTACTGTACAAGACCAATTGCAATGTTCCTAATGCTCCATACTCGTGTGATATTTGTGGCAAAGGATTTATGCACAAGAAGAATATATGGAAACATAAGAAAGTTTTGCATGCTGACCTTGTCAATGACAGAAATGACAGCGAAGAAAACACCATGCAAGCGTCTACAGAAGATGACGAGAACAATGACGAGAATGGCGCTATACTATCGACACCACAGTTCGACAGTTTTAATTTCTCGAACTACACAAACAATGCGCAAACACCGTCTACACCGCAGGAGGCAAAACCAATCTTAACATTTTCATGTGATCTTTGCTACAAGAAGTTCCCACTCAAGACTAGCTTATGGAAGCACAAACGGGCAAAGCATGGAATTATAAATGCAAGCACTAGCGGTAACGCTGAGACACCAACTCACGTCATCCCAGTTCAACTTCAATCAAGTTCTGGAGACGGCAGCCGGTCGAGTTGCACTATTTGTAAAGTTACGTTCGCTGACAAAAAATCATATTACAGGCATAGAAAGAATGTCCATAAATCAACTTCCCAGGTGTGCAAGATTTGCGGGATACCACTCAGTTCGACCTTAGAACTGTATGAGCATCTGAGAGCGGCCCACGCGCGCGAGCTTCTGGGATTCAACGCCAGTCAAGGCGTGGTGAAATCCCAATCTCAAGAGACGGGGCAGGAGTTAGAAGTCGATTACGAACCGGAGTCCGGCGACCCCAACACGGAGTATCAAGCCCGCTACCCATGCGAGGCCTGCGGAAAACAGTTTGTTGGACTTCTGGCCTTACAAAACCATCAGTGTGTAAACCAGTTGTCTAATCAGCCTCAGACATTCGAGTGCGAAATCTGCCACAAAAGTTACACCTCGATCGCCGCGCTGAAGAGTCACCGCGGCTGGCATTTGCGATCGCCTGATGGCAAGGCGGCCGCAAATAATTCCGGCCTATGGATGCCACAGCATAAAGTCACTAATAAGGTCAGCAAACACGAAGTAGTGGACCCTGTGCAGCTCGCCCGTGTCACCCACACAGCTCCAACCGCTACAGTCGCCAAGCGAAGACTGCCACCGGAAGTAGAAGTGACTGTCGTAAACCCTAACAAGAAATTACGCTCAGACGATTCCATCGAGATGGACCACAGTAATCCCGGCGGATCCGAAGATCGCTACTGCACTATATGCGACAAGGAGTTTACCAAGAGAGCGGCGTACCAGCGCCATATGGACGAGGTCCATCAGCCTAACTCCGTTTTCTGTCCCGTTTGTGACAAAAGTTTTACCAGGAAATCGACTCTCCTTGTTCACATGAGGAAGCATTACGAAGGCGGCGAGGGCAGCTCGTCGGCCACCGCACAAGACGAAGACTCGTATGGTTGCGATCTCTGCGGGGCTCAGTACCAAAACGCCGGCGCGTTGCGATCTCACAGGGCGCAGCATCACGGCGAAGTTGAGTCAGCCGAGTCGGAAGATGAGGGCAACGTGCCGGCTGCTCCTCCGGGTGAATTCACTTGCGGACAATGCGGGGACGGCGTCGCGACCCCGCGCGACCTTATCGCCCACCGAACCATGCATGCCACTTTCTCTAAATACTTCTGCACGGTTTGCAAGGTGTACTTCGCTCGGTCCGTCGACTTATCTGCACACACACGGGCCCGCCACGCCAGCGATGGCGAAAAGGTGTTCTTCCCATGCGCCATGTGTGACCGTTTCTACATGAACAAGAAAAGTCTCCAAAGACACATTGAGATGGCTCACTGA
- Protein Sequence
- MSVIYDHVCRLCLSSRGELLPIFRTTSSDGTEPPVLASKIKDCVAVQINENDDLPTRVCRKCVDNVNNWHIFKKVCERTQNKLQSLAKKDGSQLEEVKIKSEPLNDELYDDGVVIDGSYPGLEQNATSSSKLQPEGPPILASLGLTPRSDKNCVDPRMDWHRVHAILDMVQDDEVIDTLQNFEECDVLHKSEHGSDTEMELLSDIDDEFIDCKVGYKGRDKTILSKDPKISHSDTKSKIKQSSALLIKKFESVNAKHFPQPLDAWQNFFSDDILELIVESTNAIIIKRGLEVSSNTTIQEIKAFFGILYLHGITRPVYQKRSELWNEKYGIAGVKHTMSHDRFKFLLGNLCFDIEDDDESMPQFDTMKRMRKIFEIFAMNCRTMHHIENVAVIDEIIVPVFGPCPFRYDIDKKQLKKGIKLVLLVDPNSFFVSNLDVIIDPYFGPDEIVKKLVHHLAGTGKTIVMDSWYTTVSLMETLKTEYQLYSIAALSNDSGVIPPVFLSNLRKSGALMTGFLDRDTSLSSYVNSASKSVNVLTNHPKYYKKGHVSHATPVSAYKKNQSAVEVVDVLMHYYTTMQYSNDWTMSILFTLLNIASVNAQVLWGTQYTSNLIQRRVFIRELAFGLMAHSYKRVKQPLLGVESEKEEIDYEEEVNEPKQFEKVSNIPEVSITVMRPTGETLQPRQGFQQLASKNCLICDRAYRYSHNARRHELTAHSFDRYTNKVTNKKHPLAHMQPKLRPNPFNPKARLMPNPISHKMQKIQLRPKSMPSKMVPHKVIPKPVPIKAAPMKQAQNNLPYPLRIKALKDLQIKKKEPQILKTLLTSKPEVLVAEPEIVNSGPGSPETLISEPEIASFQVEAILSEPDGFDGQHGEEESERDTHVNNQGAYDNVDMESDNEIEIAHQRDEEITDRLHIDEEDGEERMSENENNADDSQMYDYENQEENQEDEEADGNEDAEMDEISEAKADDEGKDGDNINEDGGAEYHEVNPDDNDEDMDDEEDAAPLGLAPVVEINEEQHTNDSEIHEEDVEEDDELDESADANDTVDGTAQEIDPDKIYVTKTQRDFILKYRDVIQQINTKRCLCCDKEYPRRKAVIQHLQKNGHKVPKHTCYNCVITFSHIGALLSHMRADVCTNLWKVIYNENGITDDMIVEDEPKDNKVQYKDIFNARSYACKLCPAKFQLKQFITKHVLDVHEDGQSLVTLACVHCRSRFKDKGLWKKHVRNGECTIYISCDLCSEKFGNVQDFNNHALAVHAGSFDPENQSKCVDGRPTDCPLCEKKLATYQNLVKHLKLFHDEDRPHYCQNCDSKYEKAEELNNHIYLEHSDKAMGIKSEIDMSIVKEEAEEYHYSCTECNAIFETVDAWTDHQVAEHNQVAHHCDQCEKKFLRPSELAEHKNTHLRVKLYPCSICADSYSTPQKLSDHVQQAHPDASVYAAAETEFFCEICIRSFKSRQAYSNHMRIHAKVPTTNRKPGEKGFAPQIVGKPIKQFPIVQPGNVLYKTNCNVPNAPYSCDICGKGFMHKKNIWKHKKVLHADLVNDRNDSEENTMQASTEDDENNDENGAILSTPQFDSFNFSNYTNNAQTPSTPQEAKPILTFSCDLCYKKFPLKTSLWKHKRAKHGIINASTSGNAETPTHVIPVQLQSSSGDGSRSSCTICKVTFADKKSYYRHRKNVHKSTSQVCKICGIPLSSTLELYEHLRAAHARELLGFNASQGVVKSQSQETGQELEVDYEPESGDPNTEYQARYPCEACGKQFVGLLALQNHQCVNQLSNQPQTFECEICHKSYTSIAALKSHRGWHLRSPDGKAAANNSGLWMPQHKVTNKVSKHEVVDPVQLARVTHTAPTATVAKRRLPPEVEVTVVNPNKKLRSDDSIEMDHSNPGGSEDRYCTICDKEFTKRAAYQRHMDEVHQPNSVFCPVCDKSFTRKSTLLVHMRKHYEGGEGSSSATAQDEDSYGCDLCGAQYQNAGALRSHRAQHHGEVESAESEDEGNVPAAPPGEFTCGQCGDGVATPRDLIAHRTMHATFSKYFCTVCKVYFARSVDLSAHTRARHASDGEKVFFPCAMCDRFYMNKKSLQRHIEMAH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01544159;
- 90% Identity
- iTF_01544159;
- 80% Identity
- -