Basic Information

Insect: Yponomeuta rorrellus
Gene Symbol: -
Assembly: GCA_947308005.1
Location: OX371010.1:15735647-15742474[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.0031 0.22 12.6 1.8 1 23 135 157 135 157 0.98

2 12 2.3e-05 0.0017 19.2 0.6 2 23 162 184 161 184 0.94

3 12 8.5e-05 0.0062 17.5 0.8 2 23 216 237 215 237 0.97

4 12 2.8e-06 0.00021 22.1 0.4 1 23 244 266 244 266 0.98

5 12 5.4e-06 0.00039 21.2 1.5 1 23 272 294 272 294 0.98

6 12 3.3e-06 0.00024 21.9 2.3 2 23 301 322 301 322 0.98

7 12 6.7e-08 4.9e-06 27.2 0.8 1 23 328 350 328 350 0.96

8 12 1.4e-05 0.001 20.0 2.5 1 23 356 378 356 378 0.98

9 12 3.5e-05 0.0026 18.7 1.6 1 23 384 406 384 406 0.96

10 12 8.6e-06 0.00063 20.6 1.9 1 23 412 434 412 434 0.99

11 12 6e-06 0.00043 21.1 2.1 1 23 440 462 440 462 0.99

12 12 0.00016 0.012 16.6 2.2 1 22 468 489 468 490 0.92

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.0031	0.22	12.6	1.8	1	23	135	157	135	157	0.98
2	12	2.3e-05	0.0017	19.2	0.6	2	23	162	184	161	184	0.94
3	12	8.5e-05	0.0062	17.5	0.8	2	23	216	237	215	237	0.97
4	12	2.8e-06	0.00021	22.1	0.4	1	23	244	266	244	266	0.98
5	12	5.4e-06	0.00039	21.2	1.5	1	23	272	294	272	294	0.98
6	12	3.3e-06	0.00024	21.9	2.3	2	23	301	322	301	322	0.98
7	12	6.7e-08	4.9e-06	27.2	0.8	1	23	328	350	328	350	0.96
8	12	1.4e-05	0.001	20.0	2.5	1	23	356	378	356	378	0.98
9	12	3.5e-05	0.0026	18.7	1.6	1	23	384	406	384	406	0.96
10	12	8.6e-06	0.00063	20.6	1.9	1	23	412	434	412	434	0.99
11	12	6e-06	0.00043	21.1	2.1	1	23	440	462	440	462	0.99
12	12	0.00016	0.012	16.6	2.2	1	22	468	489	468	490	0.92

Sequence Information

Coding Sequence: ATGTTTGACGCTGCCAAGACATGCCGTACGTGTATGAAAACTGATGTTAATTTGGTTAGTCTATTCGATCCTTGGAATGTTGATGAAAATTCCTATTTCCAAGTTGCAGATGCACTTGCCGAAGTAACTACGACACAGATCGCTAGAGAAGATGGCTTGCCACAATGCCTTTGTGAACTCTGCTTTAAAACATTAGAAATGTCTTACACTTTCCGTAACCAAGCGCTAAAAGTAGATTTAGAATTAAGAAAGCTATTCCTTCTACAACCCAGTGTGAAGGCAGAACCTGAAGAGATTAAAAGTGAAGATGATTACACAGATGAGGCCACCGACTTTGATTATGTAAAAACAGAGGATGATGAAAGTCTTTATAAAATTGTTAGTGAAGCTACAAAACCCATATATGAATGCTACACATGCTCAAAACAATATAAAAGCAAGAAGGGGTATTTACAACATATAGCTTCACACAATGACAAATTACAATGCTCTGAATGCAACAAAAAATTTTCTCAACAAAATTCTCTCGATCTGCACATGTCTTTAGCCCACACCGGCATTGAAGAGATTTACACCGACAGAAACAACTCATATGAAAACAAAGAAGTGAAAACAGAGATCAAGACTGAATCAAACGACAAACTAGTATGTAAAATATGTGATCTACAATTTGAGAAACGCAGATCGTTAGCTAGTCATATGAAGAAGCATAGTGGTAGAAAGAAAAACTACATATGTGATGAATGCAATATGGTATTTAAGTCAAAGTCAGTGTTAGTGAGGCATATGAAGCTGCATACAAACATAAGACCTTACGAGTGTCAGCAATGCGGGAAACGGTACTCAAGAGTAGACCAGCTGAAGACACATGCGAAAAAACATAGCAGTACTAAAGCAAATGTCTGTCCTTATTGCAAAAAAGGGTTCAGTCAAATGTGTAACCTCCGGGATCACATCCGTACACATACCGGGGAGATTCCATACCTGTGTTCGGAGTGTGGGAAAGGATTCAACAACAGCTCTAACCTCAGACAGCACATGCTGCGCCACACTGGAGTCAAGCCATTCTCTTGCAATCTGTGTCCTAAGACATTTTGTACTAAAGGGCAAATGACGGTCCACCTGGACACACACACGGGCGCTCACCCGCACAAGTGTGAGCAGTGCGGCGCCTCCTTCACCAAGCCTCAGTCGCTGAAGAAACACTCGCTCATCCACCTGGGCGTCAAGCCCTATCAGTGCGACGTGTGCCCTAAAAGGTTCCTGGTGAAGGACCACCTGACACGTCACCAGCGAATTCACACGGGCGAGAAGCCCTACCGCTGCCAGTTCTGCGCGCGCGCATTCTCGCAGAGCAACGACATGACCAAGCATATGCGAACGCACGTCGGACAGAACATCTACCAATGCACAGTTTGCCAGCAACGTTACCGCACCCAAAACGACCTGAAAAAGCATTACCCCACACATTACATCAACGGGCTGGCCCCAGAGGCGGCCAAACAACTCTCTGAAGACAACAGCAATGCCCCTGACCAACCTGCTGTGGAACTTAACAATACATTGAACGGTTCTAAAGCTGCAATTGGTGGTACAAACCATGGAGTTGGTGGTACTGACAGTTCGATCATCGGCACAGATCATGGAATTAATGTAACGGACCAAAGGATCACTATAACGTTCAATCCAGATATTGTAGACAAAGATACGGGGATAGCTGGATCCATTACTATTAATATGGACCCCGAGTCAGATTAG
Protein Sequence: MFDAAKTCRTCMKTDVNLVSLFDPWNVDENSYFQVADALAEVTTTQIAREDGLPQCLCELCFKTLEMSYTFRNQALKVDLELRKLFLLQPSVKAEPEEIKSEDDYTDEATDFDYVKTEDDESLYKIVSEATKPIYECYTCSKQYKSKKGYLQHIASHNDKLQCSECNKKFSQQNSLDLHMSLAHTGIEEIYTDRNNSYENKEVKTEIKTESNDKLVCKICDLQFEKRRSLASHMKKHSGRKKNYICDECNMVFKSKSVLVRHMKLHTNIRPYECQQCGKRYSRVDQLKTHAKKHSSTKANVCPYCKKGFSQMCNLRDHIRTHTGEIPYLCSECGKGFNNSSNLRQHMLRHTGVKPFSCNLCPKTFCTKGQMTVHLDTHTGAHPHKCEQCGASFTKPQSLKKHSLIHLGVKPYQCDVCPKRFLVKDHLTRHQRIHTGEKPYRCQFCARAFSQSNDMTKHMRTHVGQNIYQCTVCQQRYRTQNDLKKHYPTHYINGLAPEAAKQLSEDNSNAPDQPAVELNNTLNGSKAAIGGTNHGVGGTDSSIIGTDHGINVTDQRITITFNPDIVDKDTGIAGSITINMDPESD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01544158;
90% Identity: iTF_01544158;
80% Identity: -