Yror015616.1
Basic Information
- Insect
- Yponomeuta rorrellus
- Gene Symbol
- clz9
- Assembly
- GCA_947308005.1
- Location
- OX371017.1:6196399-6197505[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 4.2e-11 2.7e-08 33.9 0.0 1 39 25 62 25 66 0.92 2 2 5.6 3.6e+03 -1.7 0.0 15 25 136 146 133 146 0.79
Sequence Information
- Coding Sequence
- ATGGTGCGAATTTACATCAGAAAATACACAAATATAAGAAATGGCAAATCACATACTCCTTACCAATCTTATAGCCCGGAAGATATATCTAAAGCCATTGAAGAAGTAGATAATGGGTTAAAGTTATGTGAGGCAGCTCAAAAATATAATATCCCAAAGAGTACACTTTCTAGAAAATTTAGAAAAATAAACTGCACTCCAGAAAAAGCTGGCCATCCCACTTTATTTTCTCCCGCCGAAGAAAGGTCCTTCATCGATGTAATAATAACCCTGGGTGATTGGGGGTTCCCTTTCGACTGCACAGACCTAAGACATTTTGCTCAGAAGTACATGGAGAAACTAGGAAAAGGCAACGCAAAAATGCCTGGAGATGACTGGGCCCGGAATTTTCTTGAAAGGCATAAAAAAGAACTATCCAACCGCAAGGCTTCAAATATATCCACTGACCGGGCTAAAGTAACACCAGAGGTAATAGATGAGTTCTTCTCACACTACACAAAATCTGTTGAAGGCGTCTCTCCAGACAACATTATTaactatgatgagacgaatctaacagatgaccccggctgcaagaaatacgtatttaaaagggggcagaaatacccagaaagggtaataaacaactctaaaacgtcaatatccttaatgtttaccggaactgcttctggaatatcattgcccatatatgtggtgtataaatcggagcatttatgggacacatggctcgaaggaggaccagaaggaacacggtacaaccggtcaagaagtgggtggttcgatagtatctgcttcgaagactggttcaACACAATAATTGTTCCATATGCCCGCCGACAAACAGGCCGCATTGTACTAATTGGGGACAACTTGTCGTCTCACTTCTCAGAAAGTGTGCTGAAAAAATGCCAAGAATTAAACATTACGTTTGTTTGCTTCCCCGCAAAATCGACACACCTATTACAGCCTTTGGACGTAGCCTTTTTTGCTCCTCTTAAGGCCTATTGGCGAAACGTGCTAACAATCTGGAAAAAAACAGAAGGACTAAAGCACAAAGTATTGGTAAAAAGTGCATTCCCGGGACTTAAAAAAAAAACTGAAAACTAA
- Protein Sequence
- MVRIYIRKYTNIRNGKSHTPYQSYSPEDISKAIEEVDNGLKLCEAAQKYNIPKSTLSRKFRKINCTPEKAGHPTLFSPAEERSFIDVIITLGDWGFPFDCTDLRHFAQKYMEKLGKGNAKMPGDDWARNFLERHKKELSNRKASNISTDRAKVTPEVIDEFFSHYTKSVEGVSPDNIINYDETNLTDDPGCKKYVFKRGQKYPERVINNSKTSISLMFTGTASGISLPIYVVYKSEHLWDTWLEGGPEGTRYNRSRSGWFDSICFEDWFNTIIVPYARRQTGRIVLIGDNLSSHFSESVLKKCQELNITFVCFPAKSTHLLQPLDVAFFAPLKAYWRNVLTIWKKTEGLKHKVLVKSAFPGLKKKTEN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01542884; iTF_01546571;
- 90% Identity
- iTF_01542884;
- 80% Identity
- -