Ycag008124.1
Basic Information
- Insect
- Yponomeuta cagnagella
- Gene Symbol
- -
- Assembly
- GCA_947310995.1
- Location
- OX371290.1:6353403-6354299[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 4.8e-11 2.7e-08 33.9 0.0 2 39 26 62 25 67 0.91 2 2 5 2.8e+03 -1.3 0.0 15 25 136 146 133 146 0.79
Sequence Information
- Coding Sequence
- ATGGTGCGAATTTACATCAGAAAATACACAAATATAAGAAATGGCAAATCACATACTCCTTACCAATCTTATAACCCGGAAGATATATCTAAAGCCATTGAAGAAGTAGATAATGGGTTAAAGTTATGTGAGGCAGCTCAAAAATATAATATCCCAAAGAGTACACTTTCTAGAAAATTTAGAAAAATAAACTGCACTCAAGAAAAAGCTGGCCATCCCACTTTATTTTCTCCCGCCGAAGAAAGGTCCTTCATCGATGTAATAATAACCCTGGGTGATTGGGGGTTCCCTTTCGACTGCACAGACCTAAGACATTTTGCTCAGAAGTACATGGAGAAATTAGGAAAAGGCAACGCAAAAATGCCTGGAGATGACTGGGCCCGGAATTTTCTTGAAAGGCATAAAAAAGAACTATCCAACCGCAAGGCTTCAAATATATCCACTGACCGGGCCAAAGTAACACCAGAGGTAATAGATGAGTTCTTCTCACACTACACAAAATCTGTTGAAGGCGTCTCTCCAGACAACATTATTAACTATGATGAGACGAATCTAACAGATGACCCCGGCTGCAAGAAATACGTATTTAAAAGGGGGCAGAAATACCCAGAAAGGGTAATAAACAACTCTAAAACGTCAATATCCTTAATGTTTACCGGAACTGCTTCTGGAATATCATTGCCCATATATGTGGTGTATAAATCGGAGCATTTATGGGACACATGGCTCGAAGGAGGACCAGAAGGAACACGGTACAACCGGTCAAGAAGTGGGTGGTTCGATAGTATCAGCTTCGAAGACTGGTTCAACACAATAATTGTTCCATATGCCCGCCGACAAACAGGCCGCATTGTACTAATTGGGGACAACTTGTCGTCTCACTTCTCAGAAAGCTGA
- Protein Sequence
- MVRIYIRKYTNIRNGKSHTPYQSYNPEDISKAIEEVDNGLKLCEAAQKYNIPKSTLSRKFRKINCTQEKAGHPTLFSPAEERSFIDVIITLGDWGFPFDCTDLRHFAQKYMEKLGKGNAKMPGDDWARNFLERHKKELSNRKASNISTDRAKVTPEVIDEFFSHYTKSVEGVSPDNIINYDETNLTDDPGCKKYVFKRGQKYPERVINNSKTSISLMFTGTASGISLPIYVVYKSEHLWDTWLEGGPEGTRYNRSRSGWFDSISFEDWFNTIIVPYARRQTGRIVLIGDNLSSHFSES
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01546568;
- 90% Identity
- iTF_01546568; iTF_01546571;
- 80% Identity
- -