Yplu002177.1
Basic Information
- Insect
- Yponomeuta plumbellus
- Gene Symbol
- -
- Assembly
- GCA_947310845.1
- Location
- OX371219.1:3141625-3144448[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.00016 0.015 16.5 2.1 1 21 114 134 114 135 0.93 2 17 1.6e-05 0.0015 19.7 2.2 1 23 194 216 194 216 0.96 3 17 0.58 54 5.4 5.0 1 21 219 239 219 240 0.94 4 17 0.002 0.18 13.1 0.2 1 23 253 276 253 276 0.95 5 17 2.4e-05 0.0023 19.1 1.7 1 23 282 304 282 304 0.98 6 17 0.97 90 4.7 0.1 2 23 312 333 311 333 0.95 7 17 0.46 43 5.7 1.1 1 23 339 362 339 362 0.88 8 17 1.3e-05 0.0012 20.0 1.9 2 21 485 504 484 505 0.93 9 17 0.034 3.2 9.2 0.3 3 23 512 533 511 533 0.96 10 17 0.44 41 5.7 1.3 3 23 540 561 538 561 0.93 11 17 2.6e-05 0.0024 19.1 3.2 1 23 566 588 566 588 0.97 12 17 0.95 89 4.7 1.1 2 20 592 610 592 612 0.91 13 17 0.0014 0.13 13.6 0.4 1 23 638 661 638 661 0.93 14 17 0.00065 0.06 14.7 0.7 1 23 667 689 667 689 0.95 15 17 0.014 1.3 10.5 0.4 1 23 695 717 695 717 0.98 16 17 0.2 18 6.8 0.5 1 22 723 744 723 746 0.73 17 17 0.0014 0.13 13.6 1.7 1 23 752 775 752 775 0.97
Sequence Information
- Coding Sequence
- ATGGAAGAAGCGGGACTGCCGCGCGGGCTGTGCCGATGCTGCAGCGAGGAGGCAATCGCCGCGGCGACCTTCCGCCAGCTCTGCGCTGAGTCCACCCGCCAGTGGAACCAAGCCACTAACTCCTTTCTCCTGGACGACCCAGACCCCCAGGACAAAGCCTACTACATCTTTTACCACCCGGACGGCGAGGTCGTAGTCCGCGATCAGATACGCAGAGTCACCACGACCGGGGAGGCGCTACACCGCCTCACAGAGACCATACGGGCAGACCAACCGCCAAAACCTAAAAAGAAGCGAAAGAGACTCGTGGTGCCTAGAAGCGCTCTCGTGTCGCATCACTGTAAATGCCCCGAGTGCGAACGCGAATTTTCCACCGCGTACCATTTCAACGCTCACGTGAAGAAGACCAATAGACGCGTATGCTACCACTGTGCCACTATAATGTCCAGGGAGGATCTGCCGGGGCACCTGAGCGAGTTTCACGACATAGCGTTGCTCCATTGCATACAGTGTTATAAACTATTCAGCAGCGAAATCGATCTGTGCACGCACAGCGTCGAAGCCCACGGGGTGTATTCCCACGCGTGCCAACACTGCGGCGCTAGCTTCACCAACGAGCGGGCGCTGCGAGCGCACATGTTCACACACACGCTGTTCCACTGTGACGCTTGCGGGCGGTCCTACGAGAACCGTAAGTGTTTCAAGTATCACAAGCGCCTGTGCCGTGGCTCTCCGAAGGCAGCGGAAAACTTGATGTACGTCTGCAACGAATGCGGGAACCAGTACGACAAGAAGCCATCTCTTCGCATCCATATAATACAGAAGCACTTGGACGTTCTGCCTTTCACCTGTGCGACATGTGGCAAGCGGACCTCTACGCTAGCACACCTGAAATCCCACCAAATGGTTCACAAAGAACAGCGAAAAATGCTAGAGTGTCTCGAGTGTGGCGTGAAACTGCGAACGGAGTTGGGAATGGTGTTGCACCGGCGGATCCACACGGGAGAGAAGCCGTTCGTGTGCTCGCAATGCGGGGAGAAGTTCTTGTCGGCTTCAAGGCGTCTGGACCACTATAAGAGGCGTCACATGTCCTCTAACGAGGCGCCACACGGTTGTACTTTGTGTCCCGCGCGATTCATATTGGATGAGCGCCTGTGCCCCGCTGGAGTATGCTTGGCGTGCTTCTCGGCAACGCTGCAGGCTCACGAGCTGCGATCCCTAGTCTTGCGCTCAACCAAGGCTTGGCGCGATACCCTGCGCGCTCTAGAGAGCGTCCCCTTGGCCCCCGACTCCAAAACCTCGTCCATCATCGCTCTGGTCAACGGCGACGAACTCAACATTGTAAACAGCTCCTCTAACGCCAAAACTGCGTTGGAGACGCTCAGAACTAGACTTGCTAAGAAGCCACGTCGAGGCCGCAAGCCGCGCGTCACCAGAAACGGCCCGACGTGCTCCTGCGACGATTGCGGGAAATCCTTCTCCAATCCGCATTATTTGAACCTTCACCTGCAGAATAGCGCTCAAAAGGAGGCTTGTAACTTATGCGGCCTCATATGCATAAGAGGGGAGAAACTGAAGGTCCATCTTCGCGAGGTTCACAATCAGCACTCCCACTTGTGCTCGAAGTGTCCGCTGATCTTTTCAAGCGTCACGGAGGCCCACAAACACGAGAAAGTCGCTCACAAATCTGGCGTCCACACTTGCAGCCACTGTGGCAGGACTTTCCCGAGGCAATCGTCTTTCGACGCTCACGCTCAGATGCACGCGGTCCGCACCTGCAGAGCTTGTGGGACACAGTTCGCCAACCGAGCCTGCTACAGGGAGCACCGGTCGCAGTGCGAGCCGGACGCCAAGCCCGACACCAGACTCATGCGACGCGACCTCAGATCCAACATCCGCGACCCGGCCGTCTTCATCTGCGATTACTGCGGCAAAAAGTACCTGTCGCGGCCGCAGCTCAAGAATCACATCACCTGGATCCACATGAACGTCCGCCCGCATCAGTGTCAGTGGTGCGGGAAACGGTTTTACACCGCCGCACGGTTGCTTGAGCACACCGTGGTGCACACAAGGGAACGGAACTTCTCCTGTGACATTTGCAGCGCTAAACTGGTGACGAAAATGGCTCTGGTCTACCATAGGCGAAGGCACACGGGAGAGAAGCCGTACGAGTGTTCGGATTGTGGTGAGCGGTTCCTCTCTGCGTCCCGTCGGTCTGAGCACAGCAAGCGCCGTCACGGGAAAGGGGCGATGTTTGAGTGTGGGTTGTGTGCGCATTCCTTTGTGCGCGGCCACGAGTTGCGCAAACATATGGAGAGGGTTCATCGTGGTGACGCTCAGTCGAAGCAGATGCCGATCATCACAAAGATAACATCCGAGAAGTTGGTGATGGCTTTTAGTTAG
- Protein Sequence
- MEEAGLPRGLCRCCSEEAIAAATFRQLCAESTRQWNQATNSFLLDDPDPQDKAYYIFYHPDGEVVVRDQIRRVTTTGEALHRLTETIRADQPPKPKKKRKRLVVPRSALVSHHCKCPECEREFSTAYHFNAHVKKTNRRVCYHCATIMSREDLPGHLSEFHDIALLHCIQCYKLFSSEIDLCTHSVEAHGVYSHACQHCGASFTNERALRAHMFTHTLFHCDACGRSYENRKCFKYHKRLCRGSPKAAENLMYVCNECGNQYDKKPSLRIHIIQKHLDVLPFTCATCGKRTSTLAHLKSHQMVHKEQRKMLECLECGVKLRTELGMVLHRRIHTGEKPFVCSQCGEKFLSASRRLDHYKRRHMSSNEAPHGCTLCPARFILDERLCPAGVCLACFSATLQAHELRSLVLRSTKAWRDTLRALESVPLAPDSKTSSIIALVNGDELNIVNSSSNAKTALETLRTRLAKKPRRGRKPRVTRNGPTCSCDDCGKSFSNPHYLNLHLQNSAQKEACNLCGLICIRGEKLKVHLREVHNQHSHLCSKCPLIFSSVTEAHKHEKVAHKSGVHTCSHCGRTFPRQSSFDAHAQMHAVRTCRACGTQFANRACYREHRSQCEPDAKPDTRLMRRDLRSNIRDPAVFICDYCGKKYLSRPQLKNHITWIHMNVRPHQCQWCGKRFYTAARLLEHTVVHTRERNFSCDICSAKLVTKMALVYHRRRHTGEKPYECSDCGERFLSASRRSEHSKRRHGKGAMFECGLCAHSFVRGHELRKHMERVHRGDAQSKQMPIITKITSEKLVMAFS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01545089; iTF_01543178; iTF_01544178;
- 90% Identity
- -
- 80% Identity
- -