Ycag013401.1
Basic Information
- Insect
- Yponomeuta cagnagella
- Gene Symbol
- -
- Assembly
- GCA_947310995.1
- Location
- OX371295.1:2303998-2306867[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.00017 0.012 16.5 2.1 1 21 114 134 114 135 0.93 2 19 7.1 5e+02 2.0 1.4 3 22 168 187 166 189 0.83 3 19 3.5e-05 0.0025 18.7 2.1 1 23 194 216 194 216 0.96 4 19 0.62 44 5.3 5.0 1 21 219 239 219 240 0.94 5 19 0.0021 0.15 13.1 0.2 1 23 253 276 253 276 0.95 6 19 2.4e-05 0.0017 19.2 1.1 1 23 282 304 282 304 0.98 7 19 1 74 4.6 0.1 2 23 312 333 311 333 0.95 8 19 0.42 30 5.9 2.5 1 23 339 362 339 362 0.88 9 19 0.012 0.83 10.8 0.0 3 23 372 393 371 393 0.93 10 19 0.00011 0.0078 17.2 4.2 2 21 500 519 499 520 0.92 11 19 0.026 1.9 9.6 0.0 3 23 527 548 526 548 0.93 12 19 1.7 1.2e+02 4.0 1.2 3 23 555 576 553 576 0.91 13 19 2.7e-05 0.002 19.0 3.2 1 23 581 603 581 603 0.97 14 19 0.21 15 6.8 1.4 2 20 607 625 607 627 0.91 15 19 0.0018 0.13 13.4 0.2 1 23 653 676 653 676 0.94 16 19 0.00069 0.049 14.6 0.7 1 23 682 704 682 704 0.95 17 19 0.015 1.1 10.4 0.2 1 23 710 732 710 732 0.98 18 19 0.17 12 7.1 0.4 1 21 738 758 738 761 0.73 19 19 0.00063 0.045 14.8 3.0 1 23 767 790 767 790 0.97
Sequence Information
- Coding Sequence
- ATGGAAGAGGCGGGACTGCCGCGCGGGCTGTGCCGATGCTGCAGCGAGGAAGCAATCGCCGCGGCGAACTTCCGCCAGCTCTGCACTGAGTCCACCCGCCAGTGGAACCAAGCCACTCACTCCTTCCTCCTGGACGACCCAGAGCCTCAGGACAAAGCCTACTACATCTTTTACCACCCGGACGGCGAGATCGTAGTCCGCGATCAGATCCGCAGAGTCTCCACGACCGGGGAGGCGTTACACCGCCTCACAGAGACCATACGAGCAGACCAACCGCCTAAACCGAAAAGGAAGCGAAAGAGATTGCCGGTGCCGAGGAGCGCTCTTGTGTCGCATCACTGCAAATGCCCCGAGTGCGAACGCGAATTCTCCACCGCGTACCATTTCAACGCACACGTGAAGAAGACAACTAGGCGCGTGTGCTACCACTGTGCCACTATAATGTCCAGGGAGGATCTGCCGCGGCACCTGAGCGAATTTCACGACATGACGTTCCTCCATTGCATAGAGTGCTATAAACTATTCAGCAGCGAAATGGATCTGTGCACGCATAGCATCGAAGCCCACGGGGCGTACTCTCACGCGTGCCAACACTGCGGCGCTAGCTTCAACAACGAGCGGGCGCTGCGAGCGCACATGTTCACACACTCGCTGTTCCACTGTGACGCTTGCGGGCGCTCCTACGAGAACCGCAAGTGTTTCAAGTATCACAAGCGCCTGTGCCGTGGCTCTCCGAAGCCCGCGCAAAACTTGACGTACGTTTGCAACGAATGTGGGAACCAATACGACAAGAAACCGTCTCTACGCATCCATATTATACAGAAGCACTTGAACGTACTGCCTTTCGTCTGCGCGACATGTGGCAAGCGGACCTCTACGCTGGCGCACCTGAAGTCCCACCAAATGGTACACAAGGCGCAGCGAAAAATGCTAGAGTGCCTCGAGTGCGGCGTTAAATTGCGTACGGAGTTGGGAATGGTGTTGCACAGGCGAATCCACACGGGAGAGAAGCCGTTCGTGTGCTCGCACTGCGGGGAGAAGTTCCTGTCGGCTTCCAGGCGTCTGGACCACTATAAGAGGCGTCACATGTCCTCTAATGAGGCGCCGCACGGTTGCGCGCTGTGTCCCGCACGATTCGTCCGCCCCTTCGAGTTACGCAAACATGTGGCCAATGTGCACGTTCTATTGGAAGAGCGCCTGTGCCCCGCTGGAGTATGCGTGGCGTGCGTCTCAGCAACGCTGCAGGCGCACGAGCTGCGGTCTCTGGTCTTGCGCTCAGCCAAGGCTTGGAGCGAGACCCTACGCGCTCTAGATGGCGTCCCCTTGGCCCCCGACTCGAAAACCTCGTCTATCATCGCCCTGGTCAACGGCGACGAACTCAACGTAGTAAACAGCTCCTCCGACCCCAAAACTGCCCTGGAGAAGCTCAGAACTAGACTTTCAAAGAAGCCACGTCAAGCGCGCAAGCCGCGCGTTGCGAGAAACGGCCCGACCTGCTGCTGCGACGATTGCGGGAAATCCTTCTCCAATCCGCATTATTTGAACCTTCACCTGCAGAATAGCGCTCAAAAGGAGGCTTGCAACATCTGCGGCCTCATATTCATAAGAGGGGAGAAACTGAAGGGCCACCTTCTCGAAGTTCACAATCGGCACTTTCACTTGTGCTCGAAGTGTCCTCTGATCTTTCCAAACGTGACGGAGGCCCACAAACACGAGAAAAACGCACACAAATCCGGCGTTCACACGTGTAGCCACTGTGGCAGGACTTTTCCGAGGCAGTCGTCTTTCGACGCCCACGCTCAGATGCACGCGGTCCGGACCTGCAGGGCTTGCGGAAAACAGTTCGCCAACCGAGCCTGTTACAGGGAGCACCGGTCACAGTGCGAGCCGGACGCCAAGCCCGACACCAGACTTATGCGACGCGACCTCAGGTCCAACATTCGCGACCCGGCCGTCTACATCTGCGACTACTGCGGCAAAAACTATCTTTCACGGCCGCAGCTCAAAAACCACATCACGTGGATACACATGAACGTTCGCCCGCACCAGTGTCAGTGGTGCGGTAAACGATTCTACACCGCCGCGCGGTTGCTTGAGCACACCGTAGTGCACACCAGGGAACGGAATTTCCCCTGTGACATTTGCAGCGCCAAACTGGTGACGAAAATGGCGCTTGTCTACCACAGGCGCCGGCACACGGGTGAGAAACCGTACGAGTGTACGGATTGCGGCGAGCGGTTCCTCTCGGCGTCCCGTAGGTCGGAGCACGGCAAGCGTCGGCATGGCAAAGGGACGATGTTTCAGTGTGCGCTGTGCACGCACTCGTTTGTGCGCGGACACGAGTTACGGAAACATATGGAGAGGGTCCATCGCAGTAACGCGCAGTCTAAGCAGCCGCCAACTCTCACTAAGATCAAATCCGAGCAGTTGGTGGTAGCTTTTAGTTAG
- Protein Sequence
- MEEAGLPRGLCRCCSEEAIAAANFRQLCTESTRQWNQATHSFLLDDPEPQDKAYYIFYHPDGEIVVRDQIRRVSTTGEALHRLTETIRADQPPKPKRKRKRLPVPRSALVSHHCKCPECEREFSTAYHFNAHVKKTTRRVCYHCATIMSREDLPRHLSEFHDMTFLHCIECYKLFSSEMDLCTHSIEAHGAYSHACQHCGASFNNERALRAHMFTHSLFHCDACGRSYENRKCFKYHKRLCRGSPKPAQNLTYVCNECGNQYDKKPSLRIHIIQKHLNVLPFVCATCGKRTSTLAHLKSHQMVHKAQRKMLECLECGVKLRTELGMVLHRRIHTGEKPFVCSHCGEKFLSASRRLDHYKRRHMSSNEAPHGCALCPARFVRPFELRKHVANVHVLLEERLCPAGVCVACVSATLQAHELRSLVLRSAKAWSETLRALDGVPLAPDSKTSSIIALVNGDELNVVNSSSDPKTALEKLRTRLSKKPRQARKPRVARNGPTCCCDDCGKSFSNPHYLNLHLQNSAQKEACNICGLIFIRGEKLKGHLLEVHNRHFHLCSKCPLIFPNVTEAHKHEKNAHKSGVHTCSHCGRTFPRQSSFDAHAQMHAVRTCRACGKQFANRACYREHRSQCEPDAKPDTRLMRRDLRSNIRDPAVYICDYCGKNYLSRPQLKNHITWIHMNVRPHQCQWCGKRFYTAARLLEHTVVHTRERNFPCDICSAKLVTKMALVYHRRRHTGEKPYECTDCGERFLSASRRSEHGKRRHGKGTMFQCALCTHSFVRGHELRKHMERVHRSNAQSKQPPTLTKIKSEQLVVAFS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01545976;
- 90% Identity
- iTF_01545089;
- 80% Identity
- -