Ypad004613.1
Basic Information
- Insect
- Yponomeuta padella
- Gene Symbol
- -
- Assembly
- GCA_947311075.1
- Location
- OX371257.1:1396055-1420650[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 1.5 1e+02 4.1 0.5 1 21 249 269 249 272 0.88 2 10 0.031 2.1 9.4 1.2 3 23 306 327 304 327 0.95 3 10 0.0011 0.073 14.0 4.1 1 23 370 392 370 393 0.94 4 10 8.2e-05 0.0055 17.6 0.1 1 23 397 419 397 419 0.96 5 10 2.6 1.8e+02 3.4 0.1 2 23 427 447 427 447 0.88 6 10 0.019 1.3 10.1 0.6 3 21 455 473 454 478 0.91 7 10 0.0001 0.0067 17.3 0.9 1 23 486 509 486 509 0.96 8 10 0.00062 0.042 14.8 3.5 1 23 515 538 515 539 0.97 9 10 3.8e-05 0.0025 18.6 0.3 2 23 549 570 548 570 0.96 10 10 9.4e-05 0.0063 17.4 0.5 2 23 577 599 576 599 0.96
Sequence Information
- Coding Sequence
- ATGGGCGACACTTTGATGCCCATGCTGCAATCGCACTGTTGTACGTGTCTCAGCAAAGATCGTAAGCTACATCGACTGTGCCGGATTGTTGGAGGTGTTAATAACTTGTACACACTGCTATCCATCGACGCCGAAGCGTACCGAGAAGGCTTCTACACGGAGGCCGGCGCACTGTGTGTGTGCTGGGAGTGCGGCGCGCTTCTACGTCGCTTTGCACGCTTCCGCCAGCAGGCGTGCACCGCTCAGCGTGCACTGGCTAAAGGGATAGACCGCCTGTCTCTCTCGAACCTAACCGTCGAGACACTGCCCTCTCACTCCCACGTTCCTCTGACGTCACCGGCGCAGCCGCAAGATGGCGGTGACAACTTCGTAGACTGCGGACCGGTTGATGTCAAGTCTGAACCGGAAGATGCAGATGATGTTCCGTTGTCGCGGTTGAAAGGATCACATAGTGACCCGCCCCCCGTCAGTGACAATGATGATGATATGGACGATTCCTTTATCTGCAATGACACGATCAAGGGAATATTTGGAAAAGCCAAGCATGCGAGAAAAAGCAAGGAAACAAAGCGTAAAGAAAGAAATGGACCGAAAACTAATGCGAAAAAGACAAAACTGTCAAAGGAATCTAGCCCTTCGACGAATAAAAATAAAACATATTACAGCTCAGTAGAGTTAAGCAAAGAAGAATACTTAGAAAGCGTTGAAAAACGCAAATTGACGGTAAATTATGTCGACGCGTTTTACAAATGTGAAACGTGCATAGAAGGATTCAAACTCAAAACGGATCTCGACAGTCACAACTTGGCGTTTCACACTGAGAAACCGAAACACACTTCCTGCGACATCTGCCGGCGCTACGTCGAAACCACTTGCCTAAAAGAGCACCAGAGAGGCCATTACTACAAGCATCTGTGCGACTTCTGTGACTATGTTACTTACTCCACGAGCGAGATACTCAGGCATTTGAAGACTGGACATGCTATGCAGAAGCTTGCGGTCACTGTTAATAGAAAACGGGGCCAGCGTAGGACGCCCCGCGTGCAAAATCCCGGCTCTAAGCCCAGAAGGAGCCAAGCACTGATGGACAAGAGAACGCCCTTCGGTTACCTGTGCACCGACTGCAATAAATACTTCGACAACAAAAACCAGCGCTGGAAGCACATTCAGCGGCACCACCGCGAGGGCTACCCGTGTGGCGTTTGCGGGAAACGATTCGCCTTCAAAAGCAACCGGGCGAGGCATGAGGCAGTGCACGTCGCGCCGCCTCCGCGTGAGAAATGCCCGACGTGCGAGAAGATGATCCGCGTCGACCTTATGGGGGCGCACGCGCGCACTCACGAGCAGCGAGAGGCGCGCAGTTGCGCCGCTTGTGACAAAACTTTTGTCAGCCTGGCATCCTACGAGCATCATTTGAAGTATACCAAAGCTCACACCACGCACGATATTTTGAAGTACAAATGCTCTCAGTGCGAGAAGGGCTACCGGTCGCGCGGTGAGTTGAGGGATCACGTCAACTATCAGCATTTGAGGAAGACCCTCCACCAGTGTCCAGTCTGCGGCAAGGCGCTGGCGACGCGGCGCTGCGTGACGCGGCATGTGCGGCGAGCCCACCACGGCGTGCGCGAGTCGGCGCGGGACAAAGTCTGCCAGCTCTGCGGGAAGGCTTTCCGGGACAAGAAAGGGTTGAGGGAGCACGAGCTCATTCACTCGGGGGAGAGACCTCTCAACTGCGAGCTGTGCGGCGCCAAGTTTCGGCAGAGCGCTTCGCTTTACACGCACCGTCGAAGGGTACACAAGGTGGCGCCGCGGAACATTGTGGTCGAGCACACGACCGTCAACCAGACAGAAGTGGAAACTCAACCAAAATAA
- Protein Sequence
- MGDTLMPMLQSHCCTCLSKDRKLHRLCRIVGGVNNLYTLLSIDAEAYREGFYTEAGALCVCWECGALLRRFARFRQQACTAQRALAKGIDRLSLSNLTVETLPSHSHVPLTSPAQPQDGGDNFVDCGPVDVKSEPEDADDVPLSRLKGSHSDPPPVSDNDDDMDDSFICNDTIKGIFGKAKHARKSKETKRKERNGPKTNAKKTKLSKESSPSTNKNKTYYSSVELSKEEYLESVEKRKLTVNYVDAFYKCETCIEGFKLKTDLDSHNLAFHTEKPKHTSCDICRRYVETTCLKEHQRGHYYKHLCDFCDYVTYSTSEILRHLKTGHAMQKLAVTVNRKRGQRRTPRVQNPGSKPRRSQALMDKRTPFGYLCTDCNKYFDNKNQRWKHIQRHHREGYPCGVCGKRFAFKSNRARHEAVHVAPPPREKCPTCEKMIRVDLMGAHARTHEQREARSCAACDKTFVSLASYEHHLKYTKAHTTHDILKYKCSQCEKGYRSRGELRDHVNYQHLRKTLHQCPVCGKALATRRCVTRHVRRAHHGVRESARDKVCQLCGKAFRDKKGLREHELIHSGERPLNCELCGAKFRQSASLYTHRRRVHKVAPRNIVVEHTTVNQTEVETQPK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01543308;
- 90% Identity
- iTF_01543308; iTF_01546992; iTF_01544319;
- 80% Identity
- -