Ypad007454.1
Basic Information
- Insect
- Yponomeuta padella
- Gene Symbol
- -
- Assembly
- GCA_947311075.1
- Location
- OX371256.1:7785257-7793106[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.064 4.3 8.5 2.0 1 23 88 110 88 110 0.97 2 19 0.38 26 6.0 0.1 2 23 138 160 137 160 0.92 3 19 0.0036 0.24 12.4 5.9 1 23 183 205 183 205 0.97 4 19 0.022 1.5 9.9 1.7 3 23 211 231 210 231 0.95 5 19 1.5e-06 9.8e-05 23.1 0.8 1 23 236 259 236 259 0.97 6 19 0.078 5.2 8.2 1.2 2 23 269 291 268 291 0.91 7 19 0.0029 0.2 12.7 1.7 1 23 297 320 297 320 0.95 8 19 0.23 15 6.7 3.8 3 23 326 346 325 346 0.97 9 19 2e-06 0.00013 22.6 2.5 1 23 352 374 352 374 0.98 10 19 0.051 3.4 8.8 1.0 1 23 420 442 420 442 0.96 11 19 6 4e+02 2.2 0.3 2 23 470 492 469 492 0.88 12 19 0.00022 0.014 16.2 2.8 1 23 515 537 515 537 0.98 13 19 0.11 7.2 7.8 1.0 3 23 543 563 542 563 0.96 14 19 3.4e-06 0.00023 21.9 0.9 1 23 568 591 568 591 0.96 15 19 2.2 1.5e+02 3.6 3.8 2 23 601 623 600 623 0.89 16 19 0.00023 0.016 16.1 2.5 1 23 629 652 629 652 0.97 17 19 0.0015 0.1 13.6 4.6 2 23 657 678 656 678 0.96 18 19 1.2e-05 0.0008 20.2 5.6 1 23 684 706 684 706 0.98 19 19 0.00025 0.017 16.0 2.2 1 23 714 737 714 737 0.96
Sequence Information
- Coding Sequence
- ATGTTCCCTTTCACCGTTAGCGTGTGGTATTGCTACTATAACTTCACAAATGTACCTACATGTCCGCACCGGGAATCGAACCTGGGTCTCGCTTCCAAGTCCAATGTTACAGCCACTAGGCTGCCACCGCTCGTGGTAGAAAAGGGGCCCAGACTCACTTCCGGAGTGAACCAATGGGGCCCGACCGCGGCAGAGAGAAGAAACGCGGCCACCCTCCTAGCCAACACCACTATCAAACCATTCCTCTACTGCCGATACTATTTCAAATGCTTCTACTGCAAAGAACAGTTCTCCGACATCCTAACCGTAATGGAGCATACGAAGAGGCACGAAAACCCCGACAAAATGACAATCCTAAAGAAACACCTCAGCGCTGGCAAAGGCACCGTCAAAGTTGATATATCAAACCTCAAATGCAAGCTATGCCAAAAGGAAATGCCCGATTTGGACGCGATGAAAAATCATTTATCCGAGGTGCATAAACTCTACTTCAGAGACGCCAGCCTAGGCCTAAACGCTTACAACTTGGCACCGCGCAACAGCCAATTCTGTTGCCACGTGTGCAAGAGAATGTTTCAGACGTTCATACTTTTAAACCGACACATGAACGAACATTTCAGTAACGCCATATGCGACACGTGCGGCAAAGGGTTCATGACACTTAAAAGACTTATGCACCACAAGGAGCTCCACCTAGCTGGCGGTTACCCGTGCGACAAATGCAACAAAGTCTACACGACCAGAACCAATCTAAAATATCATATTGAGACAGCCCACGAGGGAACGACGACTAGTCGTCTGTTACGCTGCCCCCACTGCCCGGAGAGGTTCGTGGAGCAGTTCAGAAAGCTTAAGCATCTCAAAGAGGCTCACGGGATCATTTTCACGTACGACTGTGAGATATGCAAGACGACGTTCCCGAGTCGAAGAGCGTACACGACTCACAACAATAAGTTTCACACTCAGAAAACGCTCTGCGAAATCTGCATGAAGCGGTTCAACTGCAAGACTTCGCTGAAGCGCCATATGGTTTCCCACACGGGGGAGAGTAACTACGTGTGCAGCATTTGTCAGAAGGCGTACAGACACCAGAAGAGCCTCAAGGATCACATGAAAGTACATGCCAATGACACTCAACCGGCGAGCAAGCAAGGCGCCGTAACGAGTATCTGGGAACTAACCATCTCTGAGAGACAGAACGCCGCCACTATCATAGAAAACACTAACGTCAGACCATTCGTTTACTGCCGTTACTACTTCAAGTGCTTCTACTGCAAAGAGCAGTACTCAGACATCACCGGCTTATTAGACCATACTACCTTACACACCAACCCAGACAAAGCCACAATCCTAAAAAAACTACTGCCGAAAGGCAAACGCACTCTCAAAGTAGACATCTCCAATCTGAACTGTAAACTATGCCAAAGAACCATGCCCGATTTAGACGCCACACGGCAACATTTAACTCAAGAACACAAGTTGGAGTTCACAGAGTCCGGCCACGGTATCATAGGCTACAACTTGACCCTGCGAAACGGCCAATTCTCCTGTCACCTATGCACGAAAATATTCCAAACGTTCATCTTACTAAACCGCCATATGAACGTGCATTTCAGTAACGCAATCTGTGAGACCTGCGGCATGGGATTCATGACGCACCAGAGGTTAATGCAGCACAAGGAGATTCATCTTCCCGGGGGATATCCTTGCGAGAAATGCAAAAAGGTGTACACTACAAGCTCTAACTTGAAGTACCACGTGGAGAAAGCTCACGAGGGTGCCACGAAAATGCGCATGCTACGTTGTCCGCACTGCTCCGAACGATTCGTCGAGCATTTCCGAAAACTGAAGCACTTGAAGCAGGCCCACGGAATAACATTCACATTCGAATGCGAAATTTGCAAGAGCTCTTTCTCGACACGGCGATCCTTGACTATGCATACGAATAAGTTCCACACTCAAAAGACCCAATGCGAAATTTGCAAGAAGAGCTTCAGTTGCAGGACGACACTGAGGAAGCACATGGTTTCGCATACAGGGGAGAGGAATTTCATATGTCACCTGTGCCAGAAGGCTTACAGACATCAGAAAAGTCTCAAACAGCATATGAGGGTACACGCAAACATCGACCATGCGAGGTTTTCCTGTTCTGAGTGCGGGAGCTGTTATGCGAGTCGGAATGATTTCAATAAACACATGAAGGAGTGGCATCCCAGGTCTTACTTTAATTTTGCACCAAGTTGA
- Protein Sequence
- MFPFTVSVWYCYYNFTNVPTCPHRESNLGLASKSNVTATRLPPLVVEKGPRLTSGVNQWGPTAAERRNAATLLANTTIKPFLYCRYYFKCFYCKEQFSDILTVMEHTKRHENPDKMTILKKHLSAGKGTVKVDISNLKCKLCQKEMPDLDAMKNHLSEVHKLYFRDASLGLNAYNLAPRNSQFCCHVCKRMFQTFILLNRHMNEHFSNAICDTCGKGFMTLKRLMHHKELHLAGGYPCDKCNKVYTTRTNLKYHIETAHEGTTTSRLLRCPHCPERFVEQFRKLKHLKEAHGIIFTYDCEICKTTFPSRRAYTTHNNKFHTQKTLCEICMKRFNCKTSLKRHMVSHTGESNYVCSICQKAYRHQKSLKDHMKVHANDTQPASKQGAVTSIWELTISERQNAATIIENTNVRPFVYCRYYFKCFYCKEQYSDITGLLDHTTLHTNPDKATILKKLLPKGKRTLKVDISNLNCKLCQRTMPDLDATRQHLTQEHKLEFTESGHGIIGYNLTLRNGQFSCHLCTKIFQTFILLNRHMNVHFSNAICETCGMGFMTHQRLMQHKEIHLPGGYPCEKCKKVYTTSSNLKYHVEKAHEGATKMRMLRCPHCSERFVEHFRKLKHLKQAHGITFTFECEICKSSFSTRRSLTMHTNKFHTQKTQCEICKKSFSCRTTLRKHMVSHTGERNFICHLCQKAYRHQKSLKQHMRVHANIDHARFSCSECGSCYASRNDFNKHMKEWHPRSYFNFAPS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01543172;
- 90% Identity
- iTF_01546851; iTF_01543172; iTF_01544168;
- 80% Identity
- iTF_01544168;