Yevo029353.1
Basic Information
- Insect
- Yponomeuta evonymella
- Gene Symbol
- -
- Assembly
- GCA_963969515.1
- Location
- OZ018370.1:1615048-1624885[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.067 5.5 8.5 2.0 1 23 56 78 56 78 0.97 2 19 0.4 33 6.1 0.1 2 23 106 128 105 128 0.92 3 19 0.0038 0.32 12.4 5.9 1 23 151 173 151 173 0.97 4 19 0.023 1.9 10.0 1.7 3 23 179 199 178 199 0.95 5 19 1.5e-06 0.00013 23.1 0.8 1 23 204 227 204 227 0.97 6 19 0.081 6.7 8.3 1.2 2 23 237 259 236 259 0.91 7 19 0.0031 0.26 12.7 1.7 1 23 265 288 265 288 0.95 8 19 0.24 20 6.8 3.8 3 23 294 314 293 314 0.97 9 19 2.1e-06 0.00017 22.7 2.5 1 23 320 342 320 342 0.98 10 19 0.053 4.4 8.8 1.0 1 23 388 410 388 410 0.96 11 19 6.3 5.2e+02 2.3 0.3 2 23 438 460 437 460 0.88 12 19 0.00023 0.019 16.3 2.8 1 23 483 505 483 505 0.98 13 19 0.11 9.3 7.8 1.0 3 23 511 531 510 531 0.96 14 19 3.6e-06 0.0003 22.0 0.9 1 23 536 559 536 559 0.96 15 19 2.3 2e+02 3.7 3.8 2 23 569 591 568 591 0.89 16 19 0.00024 0.02 16.2 2.5 1 23 597 620 597 620 0.97 17 19 0.0016 0.13 13.7 4.6 2 23 625 646 624 646 0.96 18 19 1.3e-05 0.001 20.3 5.6 1 23 652 674 652 674 0.98 19 19 0.00026 0.022 16.1 2.2 1 23 682 705 682 705 0.96
Sequence Information
- Coding Sequence
- ATGGGCTTAGGGGACCAATGTTTAGGGGACCATGCCTTCGCTGAAAAGGGGCCCAGACTAACCTCCGGAGTGAACCAATGGGGCCCGACCGCGGCAGAGAGAAGAAACGCGGCCACCCTCCTAGCCAACACCACTATCAAACCATTCCTCTACTGCCGATACTATTTCAAATGCTTCTACTGCAAAGAACAGTTCTCCGACATCCTAACCGTAATGGAGCATACGAAGAGGCACGAAAACCCGGACAAAATGACAATCCTAAAGAAACACCTCAGCGCTGGCAAAGGCACCGTTAAAGTTGATATATCAAACCTCAAATGCAAGCTTTGCCAAAAGGAAATGCCCGATTTGGACGCGATGAAAAATCATTTATCCGAGGTGCATAAACTCTACTTCAGAGACGCCAGCCTAGGCCTAAACGCTTACAACTTGGCACCGCGCAACAGCCAATTCTGTTGCCACGTGTGCAAGAGAATGTTTCAGACGTTCATACTTTTAAACCGACACATGAACGAACATTTCAGTAACGCCATATGCGACACTTGCGGCAAAGGGTTCATGACACTTAAAAGACTTATGCACCACAAGGAGCTCCACCTGGCTGGCGGTTACCCGTGCGACAAATGCAACAAAGTCTACACGACCAGAACCAATCTGAAATATCATATTGAGACAGCCCACGAGGGAACGACGACTAGTCGTCTGTTACGCTGCCCCCACTGCCCGGAAAGGTTCGTGGAGCAGTTCAGAAAGCTTAAGCATCTCAAAGAGGCTCACGGGATCATTTTCACGTACGACTGTGAGATATGCAAGACGACGTTCCCGAGTCGAAGGGCGTACACGACTCACAACAATAAGTTTCACACTCAGAAAACGCTCTGCGAAATCTGTATGAAGCGGTTCAACTGCAAGACTTCGCTGAAGCGCCATATGGTTTCCCACACGGGGGAGAGTAACTACGTGTGCAGCATTTGTCAGAAGGCGTACAGACACCAGAAGAGCCTCAAGGACCACATGAAAGTACATGCCAATGACACTCAACCGGCGAGCAAGCAAGGCGCCGTAACGAGTATCTGGGAACTAACCATCTCTGAGAGACAGAACGCCGCCACTATCATAGAAAACACTAACGTCAGACCATTCGTTTACTGCCGTTACTACTTCAAGTGCTTCTACTGCAAAGAGCAGTACTCAGACATCACCGGCTTATTAGACCACACTACCTTACACACCAACCCAGACAAAGCCACTATCCTAAAAAAACTACTGCCGAAAGGCAAACGCACTCTCAAAGTAGACATCTCCAATCTGAACTGTAAACTATGCCAAAGAACCATGCCCGATTTAGACGCCACACGGCAACATTTAACTCAAGAACACAAGTTGGAGTTCACAGAGTCCGGCCACGGTATCATAGGCTACAACTTGACCCTGCGAAACGGCCAATTCTCCTGTCACCTATGCACGAAAATATTCCAAACGTTCATCTTACTAAACCGCCATATGAACGTGCATTTCAGTAACGCAATCTGTGAGACCTGCGGCATGGGATTCATGACGCACCAGAGGTTAATGCAGCACAAGGAAATTCATCTACCCGGAGGATATCCTTGCGAGAAATGCAAAAAGGTGTACACGACAAGCTCTAACTTGAAGTACCACGTGGAGAAAGCTCACGAGGGTGCCACGAAAATGCGCATGCTACGTTGTCCGCACTGCTCTGAACGATTCGTCGAGCATTTCCGAAAACTGAAGCACTTGAAGCAGGCCCACGGAATAACATTCACATTCGAATGCGAAATATGCAAGAGCTCTTTCTCGACACGGCGATCTTTGACTATGCATACGAATAAGTTCCACACTCAAAAGACCCAATGCGAAATTTGCAAGAAGAGCTTCAGTTGCAGGACGACACTGAGGAAGCACATGGTTTCGCATACAGGGGAGAGGAATTTCATATGTCACCTGTGCCAGAAGGCCTACAGACATCAGAAAAGTCTCAAACAGCATATGAGGGTACACGCAAACATCGACCATGCGAGGTTTTCCTGTTCTGAGTGCGGGAGCTGTTATGCGAGTCGGAATGATTTCAATAAACACATGAAGGAGTGGCATCCCAGGTCTTACTTTAATTTTGCACCAAGTTGA
- Protein Sequence
- MGLGDQCLGDHAFAEKGPRLTSGVNQWGPTAAERRNAATLLANTTIKPFLYCRYYFKCFYCKEQFSDILTVMEHTKRHENPDKMTILKKHLSAGKGTVKVDISNLKCKLCQKEMPDLDAMKNHLSEVHKLYFRDASLGLNAYNLAPRNSQFCCHVCKRMFQTFILLNRHMNEHFSNAICDTCGKGFMTLKRLMHHKELHLAGGYPCDKCNKVYTTRTNLKYHIETAHEGTTTSRLLRCPHCPERFVEQFRKLKHLKEAHGIIFTYDCEICKTTFPSRRAYTTHNNKFHTQKTLCEICMKRFNCKTSLKRHMVSHTGESNYVCSICQKAYRHQKSLKDHMKVHANDTQPASKQGAVTSIWELTISERQNAATIIENTNVRPFVYCRYYFKCFYCKEQYSDITGLLDHTTLHTNPDKATILKKLLPKGKRTLKVDISNLNCKLCQRTMPDLDATRQHLTQEHKLEFTESGHGIIGYNLTLRNGQFSCHLCTKIFQTFILLNRHMNVHFSNAICETCGMGFMTHQRLMQHKEIHLPGGYPCEKCKKVYTTSSNLKYHVEKAHEGATKMRMLRCPHCSERFVEHFRKLKHLKQAHGITFTFECEICKSSFSTRRSLTMHTNKFHTQKTQCEICKKSFSCRTTLRKHMVSHTGERNFICHLCQKAYRHQKSLKQHMRVHANIDHARFSCSECGSCYASRNDFNKHMKEWHPRSYFNFAPS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01543172;
- 90% Identity
- iTF_01545083;
- 80% Identity
- iTF_01543172; iTF_01545083;