Ypad007841.2
Basic Information
- Insect
- Yponomeuta padella
- Gene Symbol
- egg
- Assembly
- GCA_947311075.1
- Location
- OX371258.1:5316067-5330448[+]
Transcription Factor Domain
- TF Family
- MBD
- Domain
- MBD domain
- PFAM
- PF01429
- TF Group
- Unclassified Structure
- Description
- The Methyl-CpG binding domain (MBD) binds to DNA that contains one or more symmetrically methylated CpGs [2]. DNA methylation in animals is associated with alterations in chromatin structure and silencing of gene expression. MBD has negligible non-specific affinity for DNA. In vitro foot-printing with MeCP2 showed the MBD can protect a 12 nucleotide region surrounding a methyl CpG pair [2]. MBDs are found in several Methyl-CpG binding proteins and also DNA demethylase [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.2 2.7e+03 -1.5 0.0 29 38 261 270 235 272 0.65 2 2 4.8e-15 1.1e-11 44.6 0.0 5 75 303 366 299 368 0.89
Sequence Information
- Coding Sequence
- ATGAAACCGTACACCACCTGCAAAGTCCGGTTTGAGCACAAGTCTAAGACCAACATAGCGACGATCTCGGCGCGCCATCTCGCGTACGCCGAGCCGGCCAGCGTGCGGCTCACCATCGGCACCCGAGTGATAGCGTTGTTCTGCGATATAATCGACCAGAACAAACGCAAGTCCTACTATTCCGGAGTGGTAGCCGAAATGCCGAATCCTGTCAACTCCTACCGCTACCTGGTCTTCTTTGACGACGGTTACGCCCAGTACGTGTCGCACTCGGACACCCGCGTGGTGTGCGAGTGCTCCCCGCTAGTGTGGGAGGAGGTGCACCCCTTCTCGCGCGAGTTCGTGCACACCTACCTGCGCGCGTACCCCGAGCGGCCCATGGTGCGCCTGCACGCCGGCCAGACCATCAAGACCGAGTGGAACGGAAAATGGTGGGTTTCGCGCGTGATCCAGGTGGACGCCTCGCTGGTGCAGGTCCACTTCGAGGCCGACAACCGCTACGAGTGGATCTACCGCGGCTCCACCCGCCTGGCGCCTCTATATCTGGAGCTGCAGGCGGCCGAGAAGCACCGGGCCAGACCTCTGCCCAGGTCTACGCAGGGAAAGAGAAACATGCCCTACGTGGAGTACACAAGGTTCGACGAGCAGGACAGTAACAAGACAACCGCGCAGTTGCAGTTGCAGGACGAGGAAATAAAGCGGCAACGCGCCGTCGCCAAGAAGTCCACGGGGCCCCAGAACAACCAGCAGGCCGCCTTGCCGGCGTTGTCTCAGGACGCTGTCATGAGTCGGGTCGTGTACTACACGCCAAAAGCAGCCGTGAAACCTCACAAAATGATACCTCACACGTGTTCGAGTAAGTGCAAAAGGACCGATGTGCTGCCACTGAAAGAGTTGAGGACTTACAACCCTCTGGCCAGGCCGTTACTTAGCGGCTGGGAGCGGCAGCTGGTGCGGCACAAGGGCCGCAAGGAGGTGATGTACCGCGCGCCGTGCGGCCGGCGCCTGCGCAACGTGCGCGAGCTGCACCGCTACCTGCGCGCCACGGCCGCCGACATGGCCGTCGACCTGTTCGACTTCTCGCCGGCCACGCACTGCTTGGCCGAGTTCGTGCTGAACCGCTGTCTGGTTAGCAAGAAGGACCTGTCCCACGGCAAGGAGAACGTCCCCGTCCCCTGCGTGAACTATTACGACACGTCCCTCCCCGAGTTCTGTTCGTACAACACGGAGCGTACGCCCACGGCCGGCGTGCCGCTCAACCTCGATCCGGAGTTCCTGTGCGGCTGCGACTGCGACGATGACTGCCAGGACAAGACGAAGTGCAAATGCTGGCAGATGACGCTGGGCGGCGCTCGGACGGTGGGGCAGGACGGGCCCTATGTGGGCTACCTTTATAAGAGGCTGCTGGAGCCTGTGCCCTCTGGCATTTATGAGTGTAACTCCAGGTAA
- Protein Sequence
- MKPYTTCKVRFEHKSKTNIATISARHLAYAEPASVRLTIGTRVIALFCDIIDQNKRKSYYSGVVAEMPNPVNSYRYLVFFDDGYAQYVSHSDTRVVCECSPLVWEEVHPFSREFVHTYLRAYPERPMVRLHAGQTIKTEWNGKWWVSRVIQVDASLVQVHFEADNRYEWIYRGSTRLAPLYLELQAAEKHRARPLPRSTQGKRNMPYVEYTRFDEQDSNKTTAQLQLQDEEIKRQRAVAKKSTGPQNNQQAALPALSQDAVMSRVVYYTPKAAVKPHKMIPHTCSSKCKRTDVLPLKELRTYNPLARPLLSGWERQLVRHKGRKEVMYRAPCGRRLRNVRELHRYLRATAADMAVDLFDFSPATHCLAEFVLNRCLVSKKDLSHGKENVPVPCVNYYDTSLPEFCSYNTERTPTAGVPLNLDPEFLCGCDCDDDCQDKTKCKCWQMTLGGARTVGQDGPYVGYLYKRLLEPVPSGIYECNSR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -