Ypad021978.2
Basic Information
- Insect
- Yponomeuta padella
- Gene Symbol
- bab1
- Assembly
- GCA_947311075.1
- Location
- OX371229.1:3103454-3108887[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.9e-17 1.3e-14 54.0 0.0 1 43 42 85 42 87 0.95 2 2 5.2 3.8e+03 -1.8 1.2 6 15 187 196 185 199 0.86
Sequence Information
- Coding Sequence
- ATGTTCATTGCAGCAGATAGCTACCAGTACCAACTGCAGTCGATGTGGCAGAAGTGCTGGAATACCAACCAGAGCCTGGTGCATAACCTGCGATTCCGGGAGCGTGGCCCTCTCAAGTCCTGGCGCCCGGAGACCATGGCCGAGGCAATCTTCTCCGTGCTGAAGGAAGGCCTCTCTCTCTCGCAAGCTGCGAGGAAATACGACATCCCGTATCCGACGTTCGTGCTCTACGCCAACCGGGTCCATAATATGCTGGGCCCCAGCGCGGACGGTGGAGCAGATTTGAGGCCGAAGGGGCGTGGGCGGCCGCAGCGCATCCTGCTGGGCGTGTGGCCGGACGAGCACATCCGCGGCGTCATCCGCGCCGTCGTCTTCCGCGACACGCACACGCCGCACGCTCCGCACGCGCACGCGCACACGCCGCATCACATCAAGGATGAGGCCATGCCCGTCTACCCCGCCATCACGGATGGCAGCGGCATCGGCGTGCCGACGGTGTACGGCGCGGCGCCGTGTGGCAACGGGCGCGACGGCGGCGTGTCGCCGAGCGCCGCGGCGGCGGCGGCTGTGGCGGCCGTGGCGCACGGCCTGCGCCGCCAGATGTGCAGCATGGTGGCGGCGCAGCGGCCGCTCGAGCCGCCGCCGCACCTGGCGCTGCCGCCGCTGCCCTCGCCGCTCACGGCGGGTCTCGAGTCGCCGCTCTGCTCGCCGCCGCCCCCCGGCCTCGCGCTCGAACCGCCCAAGCCCAACGACCCCTTCCGCCCCTTCGCCTCGCCCCGCCCCGACAGCCGATACTCGGAGCGTGAATTCATCGAGCAACCCGAGATGGGGCCCCCTAAGACACCCGTGGGCATGGCCAAGAACGGCAAGGAGCTGTCCAGCCCGGTGCCGGTGAAGATGGAGCCGCCGCCCGGCGAGGCGCGCGCGGAGCACATCTGA
- Protein Sequence
- MFIAADSYQYQLQSMWQKCWNTNQSLVHNLRFRERGPLKSWRPETMAEAIFSVLKEGLSLSQAARKYDIPYPTFVLYANRVHNMLGPSADGGADLRPKGRGRPQRILLGVWPDEHIRGVIRAVVFRDTHTPHAPHAHAHTPHHIKDEAMPVYPAITDGSGIGVPTVYGAAPCGNGRDGGVSPSAAAAAAVAAVAHGLRRQMCSMVAAQRPLEPPPHLALPPLPSPLTAGLESPLCSPPPPGLALEPPKPNDPFRPFASPRPDSRYSEREFIEQPEMGPPKTPVGMAKNGKELSSPVPVKMEPPPGEARAEHI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01561054;
- 90% Identity
- iTF_01561054;
- 80% Identity
- iTF_01543814;