Ycag003780.1
Basic Information
- Insect
- Yponomeuta cagnagella
- Gene Symbol
- znf711
- Assembly
- GCA_947310995.1
- Location
- OX371296.1:3348164-3370107[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.27 20 6.4 0.6 2 23 334 355 333 355 0.96 2 10 0.003 0.21 12.6 1.3 1 23 359 382 359 382 0.96 3 10 0.16 12 7.2 1.3 1 23 389 411 389 411 0.98 4 10 0.0013 0.094 13.7 1.0 2 23 416 438 415 438 0.90 5 10 2.9e-05 0.002 19.0 1.4 1 23 445 468 445 468 0.97 6 10 2 1.5e+02 3.7 2.0 3 21 478 496 477 501 0.93 7 10 0.00042 0.03 15.3 0.2 1 23 509 532 509 532 0.92 8 10 0.00014 0.0098 16.8 1.2 1 19 538 556 538 556 0.98 9 10 2.2e-06 0.00015 22.5 0.3 3 23 572 592 571 592 0.98 10 10 0.014 1 10.5 1.9 2 23 599 621 598 621 0.95
Sequence Information
- Coding Sequence
- ATGTCTGGGTTCCTCTCCCTGAACCTACAAGACTTCGGTCTCGGCGATGACATAACAGAAACAGTGAAATCATCGACTTTACACTGCATCAGTTGTCTTGATAAACACGCCGCCTTTATAAAGCTCATAAACTGTAAACATGCTGGGTACTTAGAGAACTTGCTGAGGCCTGAGGTTGTGCTATCAGAACATGTCATATGTGACAATTGTCATAGATTCCTGAAGAGGATTGAGTGCTTCAGGGTACAAGTGGAGGCGAGCTGGAGGATTCTGAACACTCAGTCTCAACTTACCTACCAGTTCGTCAAGCCGACTAACCTAAACCAGACCGAACCACAGACTGTAGAAATCGAACAAGACCTAGAACTACTCAGAATCCACGTGTCAGATCTCACCACTAATTTAGATGTTTCAACCTTCGAGCCTGAAGACCTAACACCACTGAAATACTTTCAAAGCAAAGCACCAGTACTGTCCACCCTAACTCCGGTACCGAGTATCCGAATCGAGCCTACATTATCACAACAAACCGCTACCCAAAAAGATGTATCAAGCTATGCTTTGAGCTACAAAAAAAGGTCTAAGGCAGCAGAGTTTGAAGATGATTTAGACGGACTCAAGAAGGATATACCTCCGGCAAATATATCTGAGCCGATTATAACAATCCATGAGGAACCGGAGACGAGTAAACTGTTCACGAGTTTGAACGAGAATGTTGCTGCTAAGGAAGAGAGTTCGGAGAGGAGTGCTGTTATGAAAGCAACTCTCCCCAAGTCCCGTAAGCAGACCAAGGAGCCGATGTACAAGCGCTTCGAGGGCAAGCTCCGGATGGTCCAGCTGACTGAAGAGGAGATGCGACTGGAGAGGGAACGAGACAGCAGCAGCGAGGCGTATCTCAAGTTCCCGTACAAGTGTGCGACGTGTATCGTCGGCTTCGATCACGAGTTGAACTATGAGGGGCACGTGAAGAGCCGACATTCTGCGAACCAACAGGGCTCGACGTGTAATATATGTAAATCTGTTTTGTCGGCCGGCAGCTCGTATAGGAAACACGTGAAAAGCCATTATACTCGATACGATTGTGAGGAGTGCGGGAAGCGGTACAAGAACCTCTACTCGTCCCTGCAGCACTATAACACGAGCCACGGCACCGTTGGTGTCACGTATAGGTGTCAACAGTGCGATTTCACCACCGAAATGATAAGCGCGTTCGCGTACCACCGCAATAAACACATGAAGAATCTACAGTGCAGCGAGTGCGGGAAGCTGTGCACTAGCATGGCCAACCTGAAGACTCATCTCTTCGCAGTCCACAAGCAGTCCAACCGCACTTACTCGTGCGCGGACTGCGACAAGCGGTACAGCAACAAGTCGGGCTGGCAACACCACCGCGACACTGCGCACGCGCACGCGGCCGGCGCCGGCGCCTACTGCGCGGACTGCCGGGTGCAGTTCAACTCTGTTAGATGCTACAAGGCTCATCTCAGGCTGAACTCGAAACACGTGGCTGATGTGGATAAAAAGTACGTGTGTTCGAGATGCGGCGCCCGCTTCGTGACCAGCACTTCCATGAAGCGGCATGTGGACTGGGTACACTTGAAGGTGTTTCAGCACCAGTGCGGCGGCTGTAGCGAGTCGTTTCGTACGCGTTCCCTTCTCAAGCGTCATGATGACCTGGTGCACAGGAAACTGCCCCCGGCGCGTGACAAGATCTGCGATTACTGCGGCAAAGGATTCACTACGGCGCAGGTGCTTCGCACACACATACGCACGCATACTGGCGAGCGGCCGCTGCACTGCGAACGATGCTCGGCGACGTTCGCACACAACGGTGCCCTTTATACACACAGAAGGCTTGTTCATAAACTTGGCAAGGGGGCTACCAGTTAG
- Protein Sequence
- MSGFLSLNLQDFGLGDDITETVKSSTLHCISCLDKHAAFIKLINCKHAGYLENLLRPEVVLSEHVICDNCHRFLKRIECFRVQVEASWRILNTQSQLTYQFVKPTNLNQTEPQTVEIEQDLELLRIHVSDLTTNLDVSTFEPEDLTPLKYFQSKAPVLSTLTPVPSIRIEPTLSQQTATQKDVSSYALSYKKRSKAAEFEDDLDGLKKDIPPANISEPIITIHEEPETSKLFTSLNENVAAKEESSERSAVMKATLPKSRKQTKEPMYKRFEGKLRMVQLTEEEMRLERERDSSSEAYLKFPYKCATCIVGFDHELNYEGHVKSRHSANQQGSTCNICKSVLSAGSSYRKHVKSHYTRYDCEECGKRYKNLYSSLQHYNTSHGTVGVTYRCQQCDFTTEMISAFAYHRNKHMKNLQCSECGKLCTSMANLKTHLFAVHKQSNRTYSCADCDKRYSNKSGWQHHRDTAHAHAAGAGAYCADCRVQFNSVRCYKAHLRLNSKHVADVDKKYVCSRCGARFVTSTSMKRHVDWVHLKVFQHQCGGCSESFRTRSLLKRHDDLVHRKLPPARDKICDYCGKGFTTAQVLRTHIRTHTGERPLHCERCSATFAHNGALYTHRRLVHKLGKGATS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01546190;
- 90% Identity
- iTF_01544336; iTF_01546994; iTF_01545236;
- 80% Identity
- -