Basic Information

Insect: Yponomeuta cagnagella
Gene Symbol: -
Assembly: GCA_947310995.1
Location: OX371296.1:8596534-8598195[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 2.9e-06 0.00021 22.1 0.5 2 23 88 110 87 110 0.95

2 15 0.00052 0.037 15.0 2.2 2 23 118 140 117 140 0.92

3 15 0.00013 0.0094 16.9 1.8 2 23 148 170 147 170 0.92

4 15 1.2e-06 8.7e-05 23.3 1.1 3 23 179 200 177 200 0.95

5 15 0.0003 0.022 15.8 0.2 2 23 208 230 207 230 0.95

6 15 0.00077 0.055 14.5 1.0 1 23 237 260 237 260 0.95

7 15 1.5e-05 0.0011 19.9 1.0 2 23 268 290 267 290 0.96

8 15 8.8e-06 0.00063 20.6 0.4 2 23 306 328 305 328 0.94

9 15 0.00048 0.035 15.1 0.4 2 23 336 358 335 358 0.94

10 15 6.8e-06 0.00049 20.9 0.7 2 23 364 386 364 386 0.95

11 15 0.007 0.5 11.5 4.7 3 23 395 416 393 416 0.96

12 15 0.00051 0.037 15.0 2.1 3 23 424 444 422 444 0.97

13 15 0.0036 0.25 12.4 0.7 2 23 451 473 450 473 0.94

14 15 0.016 1.1 10.4 2.4 1 23 480 503 480 503 0.92

15 15 0.00031 0.022 15.7 0.2 2 21 510 529 509 530 0.93

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	2.9e-06	0.00021	22.1	0.5	2	23	88	110	87	110	0.95
2	15	0.00052	0.037	15.0	2.2	2	23	118	140	117	140	0.92
3	15	0.00013	0.0094	16.9	1.8	2	23	148	170	147	170	0.92
4	15	1.2e-06	8.7e-05	23.3	1.1	3	23	179	200	177	200	0.95
5	15	0.0003	0.022	15.8	0.2	2	23	208	230	207	230	0.95
6	15	0.00077	0.055	14.5	1.0	1	23	237	260	237	260	0.95
7	15	1.5e-05	0.0011	19.9	1.0	2	23	268	290	267	290	0.96
8	15	8.8e-06	0.00063	20.6	0.4	2	23	306	328	305	328	0.94
9	15	0.00048	0.035	15.1	0.4	2	23	336	358	335	358	0.94
10	15	6.8e-06	0.00049	20.9	0.7	2	23	364	386	364	386	0.95
11	15	0.007	0.5	11.5	4.7	3	23	395	416	393	416	0.96
12	15	0.00051	0.037	15.0	2.1	3	23	424	444	422	444	0.97
13	15	0.0036	0.25	12.4	0.7	2	23	451	473	450	473	0.94
14	15	0.016	1.1	10.4	2.4	1	23	480	503	480	503	0.92
15	15	0.00031	0.022	15.7	0.2	2	21	510	529	509	530	0.93

Sequence Information

Coding Sequence: ATGGAAGCAGTTTACATAAAACCGGAAGTACTGGAAGTCAAAGTGGAGACCAGCCAGGAGTCTTTTGACCCTTATCAAGATGTTGGTCAAGCATTTCAGACTGTAGATGTGAAGATGGAGCCCTATATGCAGGCATCTGAATCTTCAAGCTACATGGACATTTCGGAAATAAATGAAAACATAAATAATGGCCATGCCTCACATGCAAACCTAAGTGAAATTGACGCAAAGGTTTACGGCAATGGCAAAAGAAACAGAATACCATGCCCAAAATGCGAACAGACATTCAAGAACAGAGCCAACCTAAAGCAACATCTAAAATATGTGCATGCTACAGAGAATGATATTGTTGAATGCAAAATATGCTTCAGGACTTTCAAGTCTATATCCCATCTCCGATCACACAATTCATCTGTACACTTTGAGGAGGGAAAGGAGATAGTCTGCGAAACATGTGGCAAACATTTTGTCAGTCGTAAAAAGCTAAACAATCACATATTCTACTCACACCCGGAACCAACGGACCAAGTGAACTGTGCGACATGCTCCAAGACATTTAAAAGCAAATACAACTTGAAGGTCCACATGAGGCTCGTGCACCCAGCCACTGACAGCTCTGTCAAGTGCCCACAGTGTGACAAAGTGTTCAAAGTAGAAATGCTCATGTTGAGGCATCTGAAATGGAGTCACCCGACAGACGGAATGACTTACAAGTGCCAAATCTGTGGCAGAGTGTTGCCGTCCATATCCTGCTACAAAAAACACCTGGAAAATGTTCACAAGAGCTTAGAAGAGTTGGTCACTTGTGATTTGTGCCACAAAGTATTTAAATCTGTGACTAATCTGAAAATTCACTTGAAGATAGTACATTCAGACAAACCGTACGAGACTAAAGAATACAAGATGGGTCACTTGCCATGCTCGGAATGCGACAAACGGTTTTCCTCAAACACTGCCCTCCAGTGGCACTATGAACGGAACCACTCAGAGAATAGGCGCAGCACAACTTGCAATTTATGCCAAAAAGAGCTGTCAGATTTCAGTGGCCTAAAACGACACATGGGGATGGTGCATTCTGTTGAGAAGGCTACATGCTCCATCTGCCAAAAAGACTTCAAGTCTCCCATGAATCTGCAGAGGCATATAACGGTGACCCACGCTCCGCCGGAGGCTGCCCAGAACTGCGACATTTGTAAGAAAACCTTCAAATGCTCCATGCACTTGCGGGTACATGTAAACACTGTGCACAAAAAAGATGGAAAGAGCAACTGTGACATATGTAACAAAGAATTTGGCTCAAAGAAGTACATGCTGAAGCATAAAAAGACGCACATATTAACGCGAGAGTGTGCCTGCGGTGTCTGCGGTAAGCTCTACAGAAGCCCAGAGGATGTCAAAAAGCATTCTAAAAGGGTTCACAATAAAACGCCAATAGTTCACGAGTGTAATGTATGTCAAACTGCTTTTGCGACAGAACAGTGTTTGACTGAGCATGTGACCCAGTTTCACAGAGAAGGTGCTCAACTGAACTGCTTCAAATGTGGTCGCGTATTCTCGCAAGAGGCTGATTTGCACTCTCACATTCTGGAATGCGGCAGTGACGATGTGCAGAAAGAGCCACTGGCTTTAGTCAAAATTGAAATGGACATTTTAGAGTCTTGA
Protein Sequence: MEAVYIKPEVLEVKVETSQESFDPYQDVGQAFQTVDVKMEPYMQASESSSYMDISEINENINNGHASHANLSEIDAKVYGNGKRNRIPCPKCEQTFKNRANLKQHLKYVHATENDIVECKICFRTFKSISHLRSHNSSVHFEEGKEIVCETCGKHFVSRKKLNNHIFYSHPEPTDQVNCATCSKTFKSKYNLKVHMRLVHPATDSSVKCPQCDKVFKVEMLMLRHLKWSHPTDGMTYKCQICGRVLPSISCYKKHLENVHKSLEELVTCDLCHKVFKSVTNLKIHLKIVHSDKPYETKEYKMGHLPCSECDKRFSSNTALQWHYERNHSENRRSTTCNLCQKELSDFSGLKRHMGMVHSVEKATCSICQKDFKSPMNLQRHITVTHAPPEAAQNCDICKKTFKCSMHLRVHVNTVHKKDGKSNCDICNKEFGSKKYMLKHKKTHILTRECACGVCGKLYRSPEDVKKHSKRVHNKTPIVHECNVCQTAFATEQCLTEHVTQFHREGAQLNCFKCGRVFSQEADLHSHILECGSDDVQKEPLALVKIEMDILES

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01545924;
90% Identity: iTF_01545057;
80% Identity: iTF_01543144;