Ycag001405.1
Basic Information
- Insect
- Yponomeuta cagnagella
- Gene Symbol
- egg
- Assembly
- GCA_947310995.1
- Location
- OX371297.1:5364214-5396468[+]
Transcription Factor Domain
- TF Family
- MBD
- Domain
- MBD domain
- PFAM
- PF01429
- TF Group
- Unclassified Structure
- Description
- The Methyl-CpG binding domain (MBD) binds to DNA that contains one or more symmetrically methylated CpGs [2]. DNA methylation in animals is associated with alterations in chromatin structure and silencing of gene expression. MBD has negligible non-specific affinity for DNA. In vitro foot-printing with MeCP2 showed the MBD can protect a 12 nucleotide region surrounding a methyl CpG pair [2]. MBDs are found in several Methyl-CpG binding proteins and also DNA demethylase [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.7 5.6e+03 -2.4 0.0 29 38 273 282 247 283 0.65 2 2 7e-15 2.3e-11 43.7 0.0 5 75 315 378 311 380 0.89
Sequence Information
- Coding Sequence
- ATGAAGGTTGTGGAGAGCGGAGTAGGCGCTCTGGTGTTCACGCCGTACACCACCTGCAAGGTCCGGTTTGAGCACAAGTCTAAGACCAACATAGCGACGATCTCGGCGCGCCATCTCGCGTACGCCGAGCCGGCCAGCGTGCGGCTCACCATCGGCACCCGAGTGATAGCGTTGTTCTGCGATATAATCGACCAGAACAAACGCAAGTCCTACTATTCCGGAGTGGTAGCCGAAATGCCGAATCCTGTCAACTCCTACCGCTACCTGGTCTTCTTTGACGACGGCTACGCCCAGTACGTGTCGCACTCGGACACCCGCGTGGTGTGCGAGTGCTCCCCGCTAGTGTGGGAGGAGGTGCACCCCTTCTCGCGCGAGTTCGTGCACACCTACCTGCGCGCGTACCCCGAGCGGCCCATGGTGCGCCTGCACGCCGGCCAGACCATCAAGACCGAGTGGAACGGAAAATGGTGGGTTTCGCGCGTGATCCAGGTGGACGCCTCGCTGGTGCAGGTCCACTTCGAGGCCGACAACCGCTACGAGTGGATCTACCGCGGCTCCACCCGCCTGGCGCCTCTATATCTGGAGCTGCAGGCGGCCGAGAAGCACCGGGCCAGACCTCTGCCCAGGTCTACGCAGGGAAAGAGAAACATGCCCTACGTGGAGTACACAAGGTTCGACGAGCAGGACAGTAACAAGACAGCCGCGCAGTTGCAGTTGCAGGACGAGGAAATAAAGCGGCAACGCGCCGTCGCCAAGAAGTCCACGGGGCCCCAGAACAACCAGCAGGCCGCCTTGCCGGCGTTGTCTCAGGACGCTGTCATGAGTCGGGTCGTGTACTACACGCCAAAAGCAGCCGTGAAACCTCACAAAATGATACCTCACACGTGTTCGAGTAAGTGCAAAAGGACCGATGTACTGCCACTGAAAGAGTTGAGGACTTACAACCCTCTGGCCAGGCCGTTACTTAGCGGCTGGGAGCGGCAGCTGGTGCGGCACAAGGGCCGCAAGGAGGTGATGTACCGCGCGCCGTGCGGCCGGCGCCTGCGCAACGTGCGCGAGCTGCACCGCTACCTGCGCGCCACGGCCGCCGACATGGCCGTCGACCTGTTCGACTTCTCGCCGGCCACGCACTGCTTGGCCGAGTTCGTGCTGAACCGCTGTCTGGTTAGCAAGAAGGACCTGTCCCACGGCAAGGAGAACGTCCCCGTCCCCTGCGTGAACTATTACGACACGTCCCTCCCCGAGTTCTGTTCGTACAACACGGAGCGTACGCCCACGGCCGGCGTGCCGCTCAACCTCGATCCGGAGTTCCTGTGCGGCTGCGACTGTGACGATGATTGCCAGGACAAGACGAAGTGCAAATGCTGGCAGATGACGCTGGGCGGCGCTCGGACGGTGGGGCAGGACGGGCCCTATGTGGGCTACCTTTATAAGAGGCTGCTGGAGCCTGTGCCCTCTGGCATTTATGAGTGTAACTCCAGATGCAAATGCAAGCACACTTGTCTCAACCGGGTGGCTCAGCATCCCTTGCAGCTCAAGTTACAGGTGTTCAAAACGCCGAACCGTGGCTGGGGCATTCGCGCTCTCAACGACGTACCGAAAGGCGCCTTCCTCTGCGTGTACGCAGGGAACCTGCTCACCGACGCCACAGCCAACTTGGACGGTCTGAACGAAGGCGACGAGTATCTAGCCGAGCTGGACTACATAGAGGTCGTCGAGCAAATGAAGGAGGGTTACGAAGAAGATGTTCCCGAGAAGGACAAGGAGTTGGACAGAGCCTCGAAGGGCAGCGCCGAGGCCGAATCCGACTCGGCCTCGTCCTCGGAGGACGAGCGGAAGGCCGACCAGGCCGACGGGGACTTCCGGCCCTTGGTCCCGTTGAACACGCAGCAGACGTTCAGCAAACGACTGCGCCGGCGCGAGAAAAAGACAAAGGACAACGAAGAGAAACAGAAGGAAGCGGAAACCAAAGGCGAGCAACCGCCGGCGGCGGCGGGCGAGAAAGAGAAAGGAGACTGCATCACCATCAGTGATGATGAAGAGGTGAGAGAGCCATCCAGGTTCATGGCGCAAACTGATATGGGTGATAACGAGCATGTATCTAAGTATAGgtctgtacgttcgttatacggcaaagacgaggcgtgctacatcatggacgcgaaagttcaaggcaacatcggcagatatctcaaccactcgtgctgtcccaatgtgttcgtgcagaacgtgttcgtggacacgcacgacccgcgcttcccgtgggtcgcgttctttgcgctgagccacatccgcgcgggcaccgagctcacctggaactacaactacgacgtgggctccgtgcccgacaaggtcctctactgctactgcggtgcccccaattgtcgtggccggcttctgtAG
- Protein Sequence
- MKVVESGVGALVFTPYTTCKVRFEHKSKTNIATISARHLAYAEPASVRLTIGTRVIALFCDIIDQNKRKSYYSGVVAEMPNPVNSYRYLVFFDDGYAQYVSHSDTRVVCECSPLVWEEVHPFSREFVHTYLRAYPERPMVRLHAGQTIKTEWNGKWWVSRVIQVDASLVQVHFEADNRYEWIYRGSTRLAPLYLELQAAEKHRARPLPRSTQGKRNMPYVEYTRFDEQDSNKTAAQLQLQDEEIKRQRAVAKKSTGPQNNQQAALPALSQDAVMSRVVYYTPKAAVKPHKMIPHTCSSKCKRTDVLPLKELRTYNPLARPLLSGWERQLVRHKGRKEVMYRAPCGRRLRNVRELHRYLRATAADMAVDLFDFSPATHCLAEFVLNRCLVSKKDLSHGKENVPVPCVNYYDTSLPEFCSYNTERTPTAGVPLNLDPEFLCGCDCDDDCQDKTKCKCWQMTLGGARTVGQDGPYVGYLYKRLLEPVPSGIYECNSRCKCKHTCLNRVAQHPLQLKLQVFKTPNRGWGIRALNDVPKGAFLCVYAGNLLTDATANLDGLNEGDEYLAELDYIEVVEQMKEGYEEDVPEKDKELDRASKGSAEAESDSASSSEDERKADQADGDFRPLVPLNTQQTFSKRLRRREKKTKDNEEKQKEAETKGEQPPAAAGEKEKGDCITISDDEEVREPSRFMAQTDMGDNEHVSKYRSVRSLYGKDEACYIMDAKVQGNIGRYLNHSCCPNVFVQNVFVDTHDPRFPWVAFFALSHIRAGTELTWNYNYDVGSVPDKVLYCYCGAPNCRGRLL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01545770;
- 90% Identity
- iTF_01545770;
- 80% Identity
- -