Ycag015060.1
Basic Information
- Insect
- Yponomeuta cagnagella
- Gene Symbol
- -
- Assembly
- GCA_947310995.1
- Location
- OX371271.1:6152576-6153067[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 6.9e-14 3.9e-11 43.0 0.1 1 42 15 57 15 59 0.93
Sequence Information
- Coding Sequence
- ATGGTGCGAAAATACGAAAGGATAAGCGGCCGCCAGTCCTGGAGCGAGGAAGATATGGCCAAGGCCGTGATGGCCGTGGTCTCTGGCAAGATGGGCTACAAGCTGGCCGCGCGGACCTTCCATATCCCGCGCTCCACGCTACAGCGCCGCGCCAGCAAGGTCCGATACCAGACGCCGGAAGATACTAAACCAGTGATGGGCCCCTACAGGAGAGTCTTCACAGAGAGCCAAGAAAAAGACCTAGTCGGCTACATCAAAAGCATGGAGCAGTTTTTCACTGGCGTCTCCAGAAGAGACATAAGAGAGCTCGCGTTCCAGTACGCCGAAGACCATCATCTAAACCACCCGTTCGATGTCAACACTAGAATGGCAGGCGAGGACTGGGTCAGGAACTTCCTGAAGAGGAACCCGGAGTTACTCGAGAAGACGTCCAAAGAGTTTGATTCGGTAAATTTCGATCAGTTTTATCACTTCATGTCTCAATTGTCATGA
- Protein Sequence
- MVRKYERISGRQSWSEEDMAKAVMAVVSGKMGYKLAARTFHIPRSTLQRRASKVRYQTPEDTKPVMGPYRRVFTESQEKDLVGYIKSMEQFFTGVSRRDIRELAFQYAEDHHLNHPFDVNTRMAGEDWVRNFLKRNPELLEKTSKEFDSVNFDQFYHFMSQLS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00786686;
- 90% Identity
- iTF_01544801; iTF_01546565; iTF_01543818; iTF_01545680; iTF_01561056;
- 80% Identity
- iTF_01544801; iTF_01546565; iTF_01543818;