Ycag023560.2
Basic Information
- Insect
- Yponomeuta cagnagella
- Gene Symbol
- bab1
- Assembly
- GCA_947310995.1
- Location
- OX371268.1:3203005-3207891[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2.8e-17 1.6e-14 53.9 0.0 1 43 66 109 66 111 0.95 2 2 7.7 4.3e+03 -1.9 1.2 6 15 211 220 209 223 0.86
Sequence Information
- Coding Sequence
- ATGGTAGATAACAATGGCTTATTTATTATCTTCTACCCGATCCCATTAACTGGAATACTTTTTGCTTCTTCAGGTTCTCCAGAAGCAGATAGCTACCAGTACCAACTGCAGTCGATGTGGCAGAAGTGCTGGAATACCAACCAGAGCCTGGTGCATAACCTGCGATTCCGGGAGCGTGGCCCTCTCAAGTCCTGGCGCCCGGAGACCATGGCCGAGGCAATCTTCTCCGTGCTGAAGGAAGGCCTCTCTCTCTCGCAAGCTGCGAGGAAATACGACATCCCGTATCCGACGTTCGTGCTCTACGCCAACCGGGTCCATAATATGCTGGGCCCCAGCGCGGATGGTGGAGCAGATTTGAGGCCGAAGGGGCGTGGGCGGCCGCAGCGCATCCTGCTGGGCGTGTGGCCGGATGAGCACATCCGCGGCGTCATCCGCGCCGTCGTCTTCCGCGACACGCACACGCCGCACGCTCCGCACGCGCACGCGCACACGCCGCATCACATCAAGGATGAGGCCATGCCCGTCTACCCCGCCATCACGGACGGCAGCGGCATCGGCGTGCCGACGGTGTACGGCGCGGCGCCGTGTGGCAACGGGCGCGACGGCGGCGTGTCGCCGAGCGCCGCGGCGGCGGCGGCTGTGGCGGCCGTGGCGCACGGCCTGCGCCGCCAGATGTGCAGCATGGTGGCGGCGCAGCGGCCGCTCGAGCCGCCGCCGCACATGGCGCTGCCGCCGCTGCCCTCGCCGCTCACGGCGGGTCTCGAGTCGCCGCTCTGCTCGCCGCCGCCCCCCGGCCTAGCGCTCGAACCGCCCAAGCCCAACGACCCCTTCCGCCCCTTCGCCTCGCCCCGCCCCGACAGCCGATACTCGGAGCGTGAATTCATCGAGCAACCCGAGATGGGGCCCCCTAAGACACCCGTGGGCATGGCCAAGAACGGCAAGGAGCTGTCCAGCCCGGTGCCGGTGAAGATGGAGCCGCCGCCCGGCGAGGCGCGCGCGGAGCACATCTGA
- Protein Sequence
- MVDNNGLFIIFYPIPLTGILFASSGSPEADSYQYQLQSMWQKCWNTNQSLVHNLRFRERGPLKSWRPETMAEAIFSVLKEGLSLSQAARKYDIPYPTFVLYANRVHNMLGPSADGGADLRPKGRGRPQRILLGVWPDEHIRGVIRAVVFRDTHTPHAPHAHAHTPHHIKDEAMPVYPAITDGSGIGVPTVYGAAPCGNGRDGGVSPSAAAAAAVAAVAHGLRRQMCSMVAAQRPLEPPPHMALPPLPSPLTAGLESPLCSPPPPGLALEPPKPNDPFRPFASPRPDSRYSEREFIEQPEMGPPKTPVGMAKNGKELSSPVPVKMEPPPGEARAEHI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01561054;
- 90% Identity
- iTF_01561054;
- 80% Identity
- -