Ycag013931.1
Basic Information
- Insect
- Yponomeuta cagnagella
- Gene Symbol
- RFX1
- Assembly
- GCA_947310995.1
- Location
- OX371272.1:2768221-2781188[-]
Transcription Factor Domain
- TF Family
- RFX
- Domain
- RFX domain
- PFAM
- PF02257
- TF Group
- Basic Domians group
- Description
- RFX is a regulatory factor which binds to the X box of MHC class II genes and is essential for their expression. The DNA-binding domain of RFX is the central domain of the protein and binds ssDNA as either a monomer or homodimer [1]. It recognize X-boxes (DNA of the sequence 5'-GTNRCC(0-3N)RGYAAC-3', where N is any nucleotide, R is a purine and Y is a pyrimidine) using a highly conserved 76-residue DNA-binding domain (DBD) [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 0.087 1.2e+03 0.8 0.0 3 16 99 112 98 115 0.86 2 2 2.5e-36 3.3e-32 111.4 0.1 3 78 137 212 135 213 0.97
Sequence Information
- Coding Sequence
- ATGGAGGTGCCTCGCTACCGCTCTTACTACCAGTGTGAAGGCGGTAACGGCGTCAACTACCACGTGCAATATGTGGAACCCCAGGAGCTTTACACGCAGCAATCTCACATGGAGACCCTGCGCACGTACCCGGTGTACGGCGTCACGACGGTCGGCGCGGCGGCCGAGGCCGAGGCCGAGCCGGCGTGGGGCGGCGGCGGCGAGGCCGAGCTGGCGGCCTACGGCGTGGTGGTGGCGGGCGAGGCCGAGCCCGCCTCGCCGGCTACGCCGCCTGCGCAGCCGCGCATGCCGCCCGCAACCGTCCAATGGCTGCTCGAGAATTACGAGACTGCTGACGTACTAAAAGGCGAGGCCGACGCCGAATCCTGCGGCGTATTGGTGGCGGGCGAGGCCGAGCCCATCTCGCCCGCCACCGTCCAATGGGTGCTCGAGAGTTACGAGACTGCTGACGGCGTATCGCTGCCCCGGTCAACTCTGTACACGCACTACCTCCGCCATTGCACTACTCATCGTTTGGATCCAGTGAACGCAGCCTCCTTCGGGAAACTCATCCGTTCAGTGTTCGTCGGGCTGCGCACGCGCCGGCTGGGCACACGCGGCAACAGCAAATACCACTACTACGGCATACGCGCCAAGCCCAGCGCGCGGCACGGCGAGCCCAGGCTTGACGACGACGACGACAAAGATGATGCGCCTATGGAGTCCCGCGCGGGCGCGGACCGCGAGCCGGCGGAGCGCGCGGGGGGTGGGGGCGGGGGCGGGGGCGTCGGCGGGGGCGGGGGCGGGGGCGGGCCGCACAGGCAGCACCTGGGGGCCGCGGCGCCGCCCGACCCGCCCGCGCTGGCGCTCGACGAGCCGCCGGACGACGTGCCCGACCTGCCGCACGCCCTGGAGGCCCTGCGGCGGCACCACAGGGACCACGGCGCCACGTTCCTGGAGTCCGTGGCGGCGCTGGACACGGCGGCCGTGGAGCGCGCGCGCCGAGCCTTCTGGCGCCGTCCGCCGCGCGCGCTCTGCCGCCGGCTGCTGTACCGGCTGGCGGCTCGGAAGGACGTGGCGGCCTGGCTGCGGCGGGCCGAGCTGGCGCTGCATCAGAAGGCTGTGGAGCTGTTGCTGCCGGATGTGCTTAGACCTATCCCGGCGCATCTGACTCAGACGGAGTTCCGGTCTCGCCTGCCGCTGTACCGGCTGGCGGCTCGGAAGGACGTGGCGGCCTGGCTGCGGCGGGCCGAGCTGGCGCTGCATCAGAAGGCTGTGGAGCTGTTGCTGCCGGATGTGCTTAGACCTATCCCGGCGCATCTGACTCAGACGGAGTTCCGGTCTCGCCTGCCGCTGTACCGGCTGGCGGCTCGGAAGGACGTGGCGGCCTGGCTGCGGCGGGCCGAGCTGGCGCTGCATCAGAAGGCTGTGGAGCTGTTGCTGCCGGATGTGCTTAGACCTATCCCGGCGCATCTGACTCAGACGGAGTTCCGGTCTCGCCTGCCGCTGTACCGGCTGGCGGCTCGGAAGGACGTGGCGGCCTGGCTGCGGCGGGCCGAGCTGGCGCTGCATCAGAAGGCTGTGGAGCTGTTGCTGCCGGATGTGCTTAGACCTATCCCGGCGCATCTGACTCAGGTGACTGCAGACGGAGTTCCGGTCTCGCCTGCCGCTGTACCGGCTGGCGGCTCGGAAGGACGTGGCGGCCTGGCTGCGGCGGGCCGAGCTGGCGCTGCATCAGAAGGCTGTGATATGTATAGTTGA
- Protein Sequence
- MEVPRYRSYYQCEGGNGVNYHVQYVEPQELYTQQSHMETLRTYPVYGVTTVGAAAEAEAEPAWGGGGEAELAAYGVVVAGEAEPASPATPPAQPRMPPATVQWLLENYETADVLKGEADAESCGVLVAGEAEPISPATVQWVLESYETADGVSLPRSTLYTHYLRHCTTHRLDPVNAASFGKLIRSVFVGLRTRRLGTRGNSKYHYYGIRAKPSARHGEPRLDDDDDKDDAPMESRAGADREPAERAGGGGGGGGVGGGGGGGGPHRQHLGAAAPPDPPALALDEPPDDVPDLPHALEALRRHHRDHGATFLESVAALDTAAVERARRAFWRRPPRALCRRLLYRLAARKDVAAWLRRAELALHQKAVELLLPDVLRPIPAHLTQTEFRSRLPLYRLAARKDVAAWLRRAELALHQKAVELLLPDVLRPIPAHLTQTEFRSRLPLYRLAARKDVAAWLRRAELALHQKAVELLLPDVLRPIPAHLTQTEFRSRLPLYRLAARKDVAAWLRRAELALHQKAVELLLPDVLRPIPAHLTQVTADGVPVSPAAVPAGGSEGRGGLAAAGRAGAASEGCDMYS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -