Xsyl019724.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Xylota sylvarum
Gene Symbol
-
Assembly
GCA_905220385.1
Location
LR999959.1:64910635-64914582[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 9 0.059 7.1 7.9 0.1 3 23 235 256 233 256 0.93
2 9 0.012 1.4 10.1 4.6 2 23 366 388 366 388 0.91
3 9 0.0018 0.21 12.7 0.6 2 23 463 485 462 485 0.95
4 9 0.0089 1.1 10.5 0.3 2 23 740 762 739 762 0.96
5 9 0.00015 0.017 16.1 0.4 2 23 797 819 797 819 0.93
6 9 0.0085 1 10.5 3.6 2 23 872 894 871 894 0.96
7 9 0.083 10 7.4 4.2 2 23 908 930 907 930 0.92
8 9 6.7e-05 0.008 17.2 0.2 2 23 985 1007 985 1007 0.96
9 9 0.095 11 7.2 1.1 1 23 1079 1101 1079 1101 0.98

Sequence Information

Coding Sequence
ATGGCTGCATCGATATATGCAACCCCACCACCCGATTTGAGCAGCGAGGACACAGCACTAAGTGATGCATCGAATTCTTCCCAAATAAGTAATACAAGTTCCCAGCACAGTAGTTCCAAACACACCACATCATCGGTAACTACTGCTGGTGGTGAAGGAGGAGGTGGAGAAGAAAGGACAAGCGGTGGAGGAGGAGAAAGTAAAAAGCATCACAAACGTAGCATAGCCGATGTTTTAATGGGCCATAACCAGGCGCTGATGGCACGTAACTTTACATCATCCTCTAGCTCGGCATTGCTGGATGCCATGCAGTTTGATCAAtcgaagaaaagaagaaaacagtcGACGCCCATCCGGTTGGCGGCATTAAATCTTAGTGCCAATGGTGGCAACAAAAATGCTGGCGAACTAACAGCGGAAATGTCCAGCCTGACGGGGGATGATGAGCATGAGCATGACAATGGGAATATAAAAGAGGAACAGAATCCGGAAGATGACAGTCAAAATGAAGACTACGACGATAAGCTATCGAAGATATTTCTACCGAAACTTGTGGGTCAACTTAACCCCTTTGAGTTGTTACACAGAAACATATCACCACTGGGAAACTTCCAGGAAAACAGAAAGATAAGATCTCCCGAAAGGGAGGAGACTGAGAGACAGGAAAATCAAGACACAATGACAAACTATTCACAGATATTCTGCAAGGAGTGTGGCGAGAATTTTGATTCTGATCTGAGGCTGAGAGTACACATCCTGCAGGAGCACTCAGTACATAGACAGCAGGAGGATGACAAACGAAATGCAGCTGATGAGCAAAACTCACTGGACATGCTTTCATCGGTTAAAGTGAAGCTGGAGAGAACTGACGAGGAGGAAACGACGTCTCCTATGCAAGATGGTCGAATGATGCAGAAACCTGATCAGTGGTTGTCTGCTATGCCCAGTTTGGGGTTTCCATTTCCCCCTGAGGCTGCAGCGGCAGCCTTTTCCAGTGGATATCTATCACAACTTCCACTCCTCGGAGTTCCGCCGGCGTTTTCATCTGTTGAGGGGCTCACTCGACCTCCTCTGAGAATATTTAACCCAGAGGCATACTGTGACCTGTGCAACAAGGAATTCTGCAACAAGTATTTCTTGAAGACGCACAAGGCCAACAAGCATGGTATATATGACCCCGCATGTACCTCTACAGATTCTGGAATGACAAGCGCACCCCCAATGGGAACTATGACTCAAGTTTTCCACTTACAActtcaacagcagcagcaaatgGAGCAGCAACAGGCTCAATTCCAGGcacaacaacatcaacaccagcagcaacaacaacaacagcaacagcagcaacaacagcagcaaataGCTCCCCCAACTCCGATGATACCGTGTGACGTATGCTCAAAGAAATTCACCAACATCTTCGCCATGAAACGTCATCGTTCCAAGGCACACGAGGTACCACCGCCTGCTGCCCAAAACCCCACTAACaacaccactaccaccacctcTTCTGCAGCCAGTACAAGTCCACATGAAATGAAATACGATCCGGATGCCACATCGATGGGACACTTAAATGAAAAGGATAACTTGCCCGAGAAGGACACTTCTGCGTCATCTTCCTCGGGTAATCTCCGCTTGCCAGAAGGATTTAGAGAGGACTTTTCTGTGGAACAAGAGGATGTGTCGTTCACCCCACAGCCACGTAAGCTATCACCCTCCTCGCAGCAACAAGCACGCGATTCGAATTTCTCCTTCGACAAGCTCAAACGATTGGGGGTCATAAATCCAGAAGCATTCTGTGACCTATGCTGCAAGGAGTACTGCAACAAATACTTCTTGAGGACGCACAAGTGGAAGCGACATGGCATCTTTGTACCGCCAGATGATACCAAAGAGGAAATCAAGATGCAGTGGCCATTCTTCGCTATGCAAACAACTCCTCTAAATCTAATGATGGCCAATGAGAAGCTTATGGAACGAAAGCCTCCACTTCCTCCTCTCGAGGGCAAGGACTTGGTGAAACGCTTAAAATTCGATTGTGATACCAAGACAATGAATGGGATGAATGAGAAAATTGATGAGCGCACAACATCCAGAGAATCTGCAGAACAGATGGGACAAACAAATGACCCGGAATCAGTAGGGTTAAACCTTCAAAAGCTGCAGTCCATGATAATGCAACTGAATGACTTAAACGGCAAACGACCCATACCGTGCCACATCTGTGGCAAGGAGATGGAGAACCAATACGTGCTCCATGCCCATATTGCCACCGAACACACTATGGACAACAATAATGGGAGTAGTCTCCCAATGCCACCGTACGTGGGGATGAAACTCTCGCCGTCATTATCTCCAGCTATGCCGACGATCACGAACGAAGTGTGCAAACAGTGCGACAGGGAATTCTCAACTCTGTTCGAATTGAAACAACATATCTCTGAGGCTCATTCTTTACCCAGCCTCAGCAACAATAGTCCGCTGCGGGAGGGCTTCGTTACTCCTGAGCGACCAATAAATACAAATTCTGGTGGAGCCACAACCCCAGGAGGGGGTAACCAGGCCGATAGGACAAGAGTTCCATATACAATTACACCCACGAGTAGTTACTGTGAGATCTGCAACAAGGAACTCTGTAACAAGTACTTCATGAAAACACATATGCAACGTATGCATGGAATCGAGATCGAAAATGGTGCCCAAATTGGCGGAGTTGTGTGTAATATCTGCAACAAAGAACTTTGCAGCAAGTATTTTCTGCGAGTGCACAAGCACAATACGCACGGCATTGTAGACGAAGGTTCTCCACTCCCACAATCTCGTCAGAGCAATGGAACAGAGCAACAAGAGCAACCAGATTTGGGCAACAATTCCTTCCCCAATGATCCCAAGGCGGACTTGGCCGGAGTGGATTTCAACACCAGATACTTCACCCACTACACTGAAGTATGTCCCCTCTGTAGTCGTCGATTCCGAAGCGCCAAATGGTTACGCGCCCACCTCATGAGCGATCACGGCCCAGTAGGAGTAGACAAACTCCGCGAAATGGAGCAACAACTTGGTGGTGGTTTCAGCAAACCCGCCAGTCCAACTTTAAAAATCCCTAACGGCAACAGTATTCCGCAGCAGAACCCCCTCAACAATATCAACCCCAATCTCCTTGTCAAAAATCCTTTTCCGGGACTCTTTGGTGCAGAAAATCCCCTACAATCGCCACGTTTCAAGGAATACCAGTGCTCCCTTTGCTCATTCTCCACCCCGTACTACGCTTTTCTGTTCATCCACGAAAGATCCCATTCGATTTTGAGCGGAACACCGTCCGCTGCAACGATCGCACCCACATCACCACCCGCTCCAATCAAATCCGAGTCGGCAGTCTCAATAGCCAAAGAGATTCCAACCGAAGTGAGTGCAAACAATCAACCGACAAGTACAACCATCAAAACTGCTGTGTCCTCTTCGTCTTCATCATCGTCGACATCATCGGGTGGAACTCCGACAACAACGCCAGCCTCAACACCGGTTCCGCAAACACCGCAAGAAACAGCCAAACGAGACTCACCGGCAGGGGCCGCCGAAACAACGCAAGCAACTACTGTACccgcaacagcaacaacatcagccacagcaacaacaacctcaacaacatcatcatcaacatcatcatcattatcaccaTCGTCATACAATATCGATGTTAATATTCTACAGGAAGTCGCAAACAAGTCCAACCGACCGGTGGCCTACGCAGTGCCGCAGGATCCAAACGGAACTGTCGTTGCAGGAAGCGAACTGATGCAGTCCTTTTTCGTTCACGAGAACAACCCATCACCAGACGGTAACGATGGATCGAACAGGTTTGTCCCAGCTCTTATTTATTTAccagttagggaacgcatctcAGGTCCAATCACCGTGTCATTTACACTGACACCagcataa
Protein Sequence
MAASIYATPPPDLSSEDTALSDASNSSQISNTSSQHSSSKHTTSSVTTAGGEGGGGEERTSGGGGESKKHHKRSIADVLMGHNQALMARNFTSSSSSALLDAMQFDQSKKRRKQSTPIRLAALNLSANGGNKNAGELTAEMSSLTGDDEHEHDNGNIKEEQNPEDDSQNEDYDDKLSKIFLPKLVGQLNPFELLHRNISPLGNFQENRKIRSPEREETERQENQDTMTNYSQIFCKECGENFDSDLRLRVHILQEHSVHRQQEDDKRNAADEQNSLDMLSSVKVKLERTDEEETTSPMQDGRMMQKPDQWLSAMPSLGFPFPPEAAAAAFSSGYLSQLPLLGVPPAFSSVEGLTRPPLRIFNPEAYCDLCNKEFCNKYFLKTHKANKHGIYDPACTSTDSGMTSAPPMGTMTQVFHLQLQQQQQMEQQQAQFQAQQHQHQQQQQQQQQQQQQQQIAPPTPMIPCDVCSKKFTNIFAMKRHRSKAHEVPPPAAQNPTNNTTTTTSSAASTSPHEMKYDPDATSMGHLNEKDNLPEKDTSASSSSGNLRLPEGFREDFSVEQEDVSFTPQPRKLSPSSQQQARDSNFSFDKLKRLGVINPEAFCDLCCKEYCNKYFLRTHKWKRHGIFVPPDDTKEEIKMQWPFFAMQTTPLNLMMANEKLMERKPPLPPLEGKDLVKRLKFDCDTKTMNGMNEKIDERTTSRESAEQMGQTNDPESVGLNLQKLQSMIMQLNDLNGKRPIPCHICGKEMENQYVLHAHIATEHTMDNNNGSSLPMPPYVGMKLSPSLSPAMPTITNEVCKQCDREFSTLFELKQHISEAHSLPSLSNNSPLREGFVTPERPINTNSGGATTPGGGNQADRTRVPYTITPTSSYCEICNKELCNKYFMKTHMQRMHGIEIENGAQIGGVVCNICNKELCSKYFLRVHKHNTHGIVDEGSPLPQSRQSNGTEQQEQPDLGNNSFPNDPKADLAGVDFNTRYFTHYTEVCPLCSRRFRSAKWLRAHLMSDHGPVGVDKLREMEQQLGGGFSKPASPTLKIPNGNSIPQQNPLNNINPNLLVKNPFPGLFGAENPLQSPRFKEYQCSLCSFSTPYYAFLFIHERSHSILSGTPSAATIAPTSPPAPIKSESAVSIAKEIPTEVSANNQPTSTTIKTAVSSSSSSSSTSSGGTPTTTPASTPVPQTPQETAKRDSPAGAAETTQATTVPATATTSATATTTSTTSSSTSSSLSPSSYNIDVNILQEVANKSNRPVAYAVPQDPNGTVVAGSELMQSFFVHENNPSPDGNDGSNRFVPALIYLPVRERISGPITVSFTLTPA*