Basic Information

Insect: Xylota sylvarum
Gene Symbol: -
Assembly: GCA_905220385.1
Location: LR999958.1:17814350-17819785[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.47 57 5.0 3.9 1 23 1202 1225 1202 1225 0.95

2 12 0.00023 0.028 15.5 5.3 2 23 1383 1404 1383 1404 0.97

3 12 0.00046 0.056 14.5 0.4 3 23 1412 1432 1410 1432 0.98

4 12 1.4e-07 1.7e-05 25.6 3.6 2 23 1439 1460 1438 1460 0.97

5 12 2.5 3e+02 2.8 0.1 5 23 1473 1491 1471 1491 0.96

6 12 0.0072 0.87 10.8 3.4 3 23 1498 1519 1496 1519 0.95

7 12 0.13 15 6.8 0.1 2 23 1530 1550 1529 1550 0.96

8 12 6.8e-05 0.0082 17.1 0.8 1 19 1556 1574 1556 1575 0.96

9 12 3.9e-05 0.0047 17.9 0.5 1 23 1586 1608 1586 1608 0.99

10 12 0.0002 0.024 15.7 9.0 1 23 1614 1636 1614 1637 0.96

11 12 0.0011 0.13 13.4 4.7 1 23 1642 1664 1642 1664 0.98

12 12 0.0013 0.16 13.1 6.0 1 23 1670 1692 1670 1693 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.47	57	5.0	3.9	1	23	1202	1225	1202	1225	0.95
2	12	0.00023	0.028	15.5	5.3	2	23	1383	1404	1383	1404	0.97
3	12	0.00046	0.056	14.5	0.4	3	23	1412	1432	1410	1432	0.98
4	12	1.4e-07	1.7e-05	25.6	3.6	2	23	1439	1460	1438	1460	0.97
5	12	2.5	3e+02	2.8	0.1	5	23	1473	1491	1471	1491	0.96
6	12	0.0072	0.87	10.8	3.4	3	23	1498	1519	1496	1519	0.95
7	12	0.13	15	6.8	0.1	2	23	1530	1550	1529	1550	0.96
8	12	6.8e-05	0.0082	17.1	0.8	1	19	1556	1574	1556	1575	0.96
9	12	3.9e-05	0.0047	17.9	0.5	1	23	1586	1608	1586	1608	0.99
10	12	0.0002	0.024	15.7	9.0	1	23	1614	1636	1614	1637	0.96
11	12	0.0011	0.13	13.4	4.7	1	23	1642	1664	1642	1664	0.98
12	12	0.0013	0.16	13.1	6.0	1	23	1670	1692	1670	1693	0.96

Sequence Information

Coding Sequence: ATGGGTGGCAACGTGCAGTGTCCAGTATGTACATTATTTCTGCTTCCTGGTATGGATTTATCCGATCATCTGGAGACACATCCCAAAGAGCAGGTCATAAAAGCACTCGTACAATTGAGCCTTAAATCGGAGGTATCTGAGATAGTAACGCCAGATACTCCAAAGAAAGTCAATAAGACACCTTTCATCGAGAATGGTATTAATCATCAGACTACAGATGATGAAAGGACAACCCCTATGTCGGAGATTAGTGGGGGTAGTGGGAGCAATAGTACCGCTACAATGGTGGGAATACATGAAAAGAGAAGGGAGGTAGAGGACAATAATCCACTCGCTCCGATacctcaaaatattttattgaatagACAATGTGGATATCTGTTTGAGAACAATAGTaatagcagtagtagtagtagtaatttcTTTGTACCACCGACATCATATTATCATcatattcatcatcatcaacaacaacaacagcaaccacAACAACCACAGCAATCGccgcaacaacagcagcaaccgCAACAACAATCACAACATCATACTCACCAACAAAACTACCATCCCTATCATGGTCATCCACATGGTGGTAATAACTCTAATATGGGCCAAGCACCAACGCAGCCTCCATTACGACTCTTCTCCTATCAACAACCACCCAAACCGTTGCAACCACCGCCCGCCTATGGCGCAGCCATAAGTCAACTTCGATCTCAAAATAGCCAAAACCTAATGGTAAACAACGTCAATCGCCCACTATATTCACCGGGAAATTACACACCCACatcattgtcatcatcatcatcatcattatcgccGTCATCTACGATACCATCACGTTTGCCGCCGCCTCTACCACCGCCACCTCTAAATCAGCGTTATCAACCTAGCTTCCCGCAAATGGAGCCTGCTTTTGTCGATGCATGTGACAATAGTGGAATGTCTCCACGAAGAACATCTATGACACCACCAATTCGAGCTCCTCCTCAATTATACCGTTCGCCATTATCATCAAGCGGACAGTACTCAAGACAGTCAAGCTCCCCCTACTCTGTAATGACTGGTTCACCATCTGTGTTAAGGTTTGCTGAATCACCCGTTACGGCGCACTATCTAGAGCGAGAAAATGGTGATTTCATTGTTCAAGAGACGCCCAAGCACGTTGTCGAGTGTGTGGAAAAGGACGACGGAGAGTTTTCGGTAATCGAACGAGTCTATCATATGCCACCGAGTGTTGTTCAAATTAACGAGGATCAGGACGATGATTTGTCCGATCATGGGTCGAATATTGAAGACATGAAGATGCTAGAGGATGATCGACCAAGCGGAACATGGTCCAGTGGACGGTCGCCAGAACAAGGACAAACAGTTCAGCAGCGACAGCAGAAGAAATCCGGGATTACCGTGCTCAGTGATGTACAATTAGACTTAAATGAATACCTAGACTTAATGGGAAACATAATAGCCTCGAGCAAGGTGGCTAAAACTCGTActgaaatgataaaaattgagaaattcgAACCTGATGACGTGAAAGAGGAAATAGGCGGGCCAAATTGCCGCGACGATAAGGATGACGATGTTTCACAGGGTATTGTAGAACAGGCTAAAGGAGAGCAACAACGTTACAGCGATGAGCAAACTTGTTGCTCCGCGGCAGTAACTGCTGCGTCTACTTCTGTCTCCATACCGGCGGAATCACCGGTTACACCTGGAACAACTAGTGTCATACGATTGGCGGCAAATCCCAATGCAAGAAGCAATACACCCACAACATCAACGAAGGTTGAGGAATCAATGCAGACTGAAGCTCCTGAGACGTCCACAACGATAGTTGAGGAAGCTGCGCACACATCATCCATGGACATACAAATAACAAAGGTTGAGGGAGCACTGTTGACAGCAATCACAGATACACCGACATCAAATGTGGACGAAGCTGCGCAGGCAACAAGCACTAAAGAACCCACAGAAAGGGTTGAGGAAGTCATGCAAACAGCAAGCGTCAATACGCTGCCAGAGAAGGCTGAGGAAACAATACACACGACAACAAGCACCAGTCCACCTGTAACCAAGGTTGAAGAAGCAGCGCAACTGCCAAGCCCAGCGCAAGTCGATTTACAGATCCAACCTCAATTACCGCTTCCACAGGATGAGGCACCGGGAAAACACACAACTGCTGAAAAATccgaaaaacatgaaaaacatgaaaagccagagaaacaagaaaaacacgAAAAGCTTGTAAAGGAAGACAAACATGTTAAAAGAGATGAAAATCCACCAATTCTTGCATATCAGCAGCACCAGTCAATCAAGCGACCAATCAAAAAGGCGCCGAAAAAACTTGTTATCAAACCAAAAAGCAAGGAATCCATAACAGCCCATCCCGCTCCGCAACCTCGAATTGCATCAACAACGCCTACGACTATTCAAATACCTACGCCATCCACCTCAACGGAAATCATATCCTCGGAACCACAAAAGGAGGAAGTGATGTCCGAAGCACCTGAAGTAACTCAGGGAGAACTAAATAGcattaaaacagaaaatttaCCAGTTGTTGCATCAGTCCCGGTTGCACAGCCCCTATTGACTAACGCCGAAGAGAAGCTGGCAACCGACGATGATATGCAACCGTCTACATCGAATGTGATGGCCCCCGAGAAGGAAGTTGCGCTGGCGAGTGATCCTTCGAAAGATAAACCCACCGCCGACTTGACAGCATTCCTCGACCACTGCATGAAAAAAGAAGAGGTTGAAGTGCATCCAATGCACTCAATATTTGGCATGGAAATCGAGGGTCCAGTGGAAAATCTGGATGATGCACTGactccaccgccaccaccagaGTTTCCATCGGCTTCTCTGTTCGCCAAACCACTAATGAGTTCTGAACATCTATCGATGTCAGAGTCGGTGCTTCCCGATAGCAGTGAAATGCAGGAACAGGATCAAAATCaaccacagcagcagcagcagcaaaataACTCTGCTTATGTGGAATATCCCTTCAGTTTTCTTTACGGTGGGGAAGCGAATCACCAAGAGGAGAACAAACACAGCATCTCACCGCCAATGTACTGCAGTGAAGATTTCAATAAATACAGTGCAAGTACGAGTGGAGGAAATAGTGCGAGCTGCACATGGTATCAGTCGCAAAGTAGTGAAATCGATTTCGAAATGGACGGCAAAGGTAGTTATTTAGATTTGGATTCATGTAAGCGAAGTACATCGTTTGCCGCAGCAACTGAGGGCAGTATGCCAACGACAGATACCCTGAACATAAGAACGGACGAGAAGATGCCGGCAAAAGGAGAAATTTCTGAACAGGAGAGCAATTGCGGAGTTGAGAATTCGTGGAGTCAACCGCTTTACAACGAGTTCCCTGTTCGCTTTCCGAATCCCTATCAAACTTTTATGTCGACCCATGAGAGCTGGAGCAACGACCACTACTTCCGACCCCAGGATCTGAGCTCATCTGTGGAAACAAAGAACTTTGCTTTGCGGTTAACCGAGGAATCACCAATTATGGACACACTACCATCCACATCAAAGCGAAAGAATAAAGCGCCCATAAAAGTGCCACGCAAGAAAACATTCTCCTGTACTCATTGCAATACGCACTTTCCACTACTCAAGGAAAAAAACGCACACTTGATAAAACAACACGGCTACAAGCGTGTAAATCGGCGTCTTGTACGTGACCCACCGACTTCAACTGTTACCACGGCGACTATGAATACAATCGACGCTGGTGCCTCTTTGCTGCTTGGTTGTTTGGAACCAAGAGCATTACCACCCCCACCGCTGGCCAACGAGGAGGACTCTAAGGCTGCGATTGTAAAAATCGAGCAAGAAAATCAGGATCAAAAGGATTGCAAAAAAAGTCTTTCCAGCCTAAAACTGAACACAGCATTGCTGCCTACAAGTGCAAGTATTTCCCGCACCAAGTATGACTCGATGCGAGCACGAGACAATCGTATGCTTATTAATTTCAATCTAAATGCACTAAACGTGAAGAACGAGGGCGAAATGCACAGCTATTACATGGAATCTAAATCATCATTCTGCTGTTTTGTTTGCAGGCGGGACTTTCTAACGGTCAAGCTGTTTGATGAACATTTGGCTGAACACCCCGCCGAGTGTTTTACATGCCACAAGAAGTTCACGAGATGGAAAAACTTTATGGTTCACCTGAAACGGCATCTCGGTTGGAAAGACTTTGGATGCACCTTTtgtgagaagaaatttgtaattCGTAGCGCCTTGGTGGAACACATGCGAATGCACACGGGTCAGACGCCACTAAAGTGTAAGATCTGTGGCAAAAGTTTCAAACGTTATTCCAACCTAACACAGCACCGAAAGCGACATGGCACTAAAATCAATCGTACCAAAGAGTACGTTTGCTACTGTGGCGAAGTGCTGCCGTCGAAAGCGCGCTTTATTTGGCATAAAGAGACGCACGACTTGAAACCGAAATGTTGTCCATATTGTAGAGATCGATTTGTGCACGCGAATAGCTTGCGACGCCACATACGACTGGCGCATTCCGATAAATTCGACTACACCGAACCAATGGAGTGTCCGATGTGCAAGCAAATTTACGCCAAATCCAGCATCAAAGCGCACATGGCAACGCATTCAATGGACACACAGCATGAATGTCTAATTTGCAATAAATCTTTCAGCACCAAGTGGAATCTGAAAATTCACAATTGGGTGCATGCGAATCGTACGACAAAACCCTACAAATGTGATCAATGCGTAAAAGCGTTTGTGCGCGAAGTGGACTATAACAATCACATGAACTCGCACAAACAGATCAAGCCATATACGTGCGAACACTGCGGCTGTAAGTTCATACGCAAATACAATTATATACGGCATCGGCGTGAGCATCACGGGAATAAAAAATTCACCTGCGATCTCTGCGGAAAACTCTTCCACCGGCATTACTATCTAATCGAACACCGGCGTATTCACACTGGCGAGCGACCATTCCagtgcacgatatgtggcaaaAGCTCCACGACGAAGACGAACCACAACAAACACCTAAAGATTCATCATTCGCGGGATCCGTTCACATCGGAGGCGTAA
Protein Sequence: MGGNVQCPVCTLFLLPGMDLSDHLETHPKEQVIKALVQLSLKSEVSEIVTPDTPKKVNKTPFIENGINHQTTDDERTTPMSEISGGSGSNSTATMVGIHEKRREVEDNNPLAPIPQNILLNRQCGYLFENNSNSSSSSSNFFVPPTSYYHHIHHHQQQQQQPQQPQQSPQQQQQPQQQSQHHTHQQNYHPYHGHPHGGNNSNMGQAPTQPPLRLFSYQQPPKPLQPPPAYGAAISQLRSQNSQNLMVNNVNRPLYSPGNYTPTSLSSSSSSLSPSSTIPSRLPPPLPPPPLNQRYQPSFPQMEPAFVDACDNSGMSPRRTSMTPPIRAPPQLYRSPLSSSGQYSRQSSSPYSVMTGSPSVLRFAESPVTAHYLERENGDFIVQETPKHVVECVEKDDGEFSVIERVYHMPPSVVQINEDQDDDLSDHGSNIEDMKMLEDDRPSGTWSSGRSPEQGQTVQQRQQKKSGITVLSDVQLDLNEYLDLMGNIIASSKVAKTRTEMIKIEKFEPDDVKEEIGGPNCRDDKDDDVSQGIVEQAKGEQQRYSDEQTCCSAAVTAASTSVSIPAESPVTPGTTSVIRLAANPNARSNTPTTSTKVEESMQTEAPETSTTIVEEAAHTSSMDIQITKVEGALLTAITDTPTSNVDEAAQATSTKEPTERVEEVMQTASVNTLPEKAEETIHTTTSTSPPVTKVEEAAQLPSPAQVDLQIQPQLPLPQDEAPGKHTTAEKSEKHEKHEKPEKQEKHEKLVKEDKHVKRDENPPILAYQQHQSIKRPIKKAPKKLVIKPKSKESITAHPAPQPRIASTTPTTIQIPTPSTSTEIISSEPQKEEVMSEAPEVTQGELNSIKTENLPVVASVPVAQPLLTNAEEKLATDDDMQPSTSNVMAPEKEVALASDPSKDKPTADLTAFLDHCMKKEEVEVHPMHSIFGMEIEGPVENLDDALTPPPPPEFPSASLFAKPLMSSEHLSMSESVLPDSSEMQEQDQNQPQQQQQQNNSAYVEYPFSFLYGGEANHQEENKHSISPPMYCSEDFNKYSASTSGGNSASCTWYQSQSSEIDFEMDGKGSYLDLDSCKRSTSFAAATEGSMPTTDTLNIRTDEKMPAKGEISEQESNCGVENSWSQPLYNEFPVRFPNPYQTFMSTHESWSNDHYFRPQDLSSSVETKNFALRLTEESPIMDTLPSTSKRKNKAPIKVPRKKTFSCTHCNTHFPLLKEKNAHLIKQHGYKRVNRRLVRDPPTSTVTTATMNTIDAGASLLLGCLEPRALPPPPLANEEDSKAAIVKIEQENQDQKDCKKSLSSLKLNTALLPTSASISRTKYDSMRARDNRMLINFNLNALNVKNEGEMHSYYMESKSSFCCFVCRRDFLTVKLFDEHLAEHPAECFTCHKKFTRWKNFMVHLKRHLGWKDFGCTFCEKKFVIRSALVEHMRMHTGQTPLKCKICGKSFKRYSNLTQHRKRHGTKINRTKEYVCYCGEVLPSKARFIWHKETHDLKPKCCPYCRDRFVHANSLRRHIRLAHSDKFDYTEPMECPMCKQIYAKSSIKAHMATHSMDTQHECLICNKSFSTKWNLKIHNWVHANRTTKPYKCDQCVKAFVREVDYNNHMNSHKQIKPYTCEHCGCKFIRKYNYIRHRREHHGNKKFTCDLCGKLFHRHYYLIEHRRIHTGERPFQCTICGKSSTTKTNHNKHLKIHHSRDPFTSEA*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01541698; iTF_00241697;
90% Identity: iTF_01541698;
80% Identity: -