Xseg000641.1
Basic Information
- Insect
- Xylota segnis
- Gene Symbol
- -
- Assembly
- GCA_963583995.1
- Location
- OY757236.1:15233862-15239315[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.49 37 5.0 3.9 1 23 1205 1228 1205 1228 0.95 2 12 0.00024 0.018 15.5 5.3 2 23 1385 1406 1385 1406 0.97 3 12 0.00048 0.036 14.5 0.4 3 23 1414 1434 1412 1434 0.98 4 12 1.5e-07 1.1e-05 25.6 3.6 2 23 1441 1462 1440 1462 0.97 5 12 2.6 1.9e+02 2.8 0.1 5 23 1475 1493 1473 1493 0.96 6 12 0.0075 0.57 10.8 3.4 3 23 1500 1521 1498 1521 0.95 7 12 0.13 10 6.8 0.1 2 23 1532 1552 1531 1552 0.96 8 12 7.1e-05 0.0054 17.1 0.8 1 19 1558 1576 1558 1577 0.96 9 12 4.1e-05 0.0031 17.9 0.5 1 23 1588 1610 1588 1610 0.99 10 12 0.00021 0.016 15.7 9.0 1 23 1616 1638 1616 1639 0.96 11 12 0.0011 0.084 13.4 4.7 1 23 1644 1666 1644 1666 0.98 12 12 0.0014 0.1 13.1 6.0 1 23 1672 1694 1672 1695 0.96
Sequence Information
- Coding Sequence
- atgggTGGCAACGTGCAGTGTCCAGTATGTACATTATTTCTGCTCCCTGGTATGGATTTGTCCGACCATCTGGAGACGCATCCCAAGGAGCAGGTCATAAAAGCACTCGTACAATTGAGCCTTAAATCGGAGGTATCTGAGACAGTAACGCCAGATACTCCAAAGAAAGTCAATAAGACACCTTTCATCGAGAATGGTATTAATCATCAGACTACGGATGATGAAAGGGCAACCCCTATGTCCGAGATTAGTGGGAGTGGGAGCAATAGTACCGCCCTCACGGTAGGAGTACATGAAACGAGAAGAGAGGTAGAGGACAATAATCCCCTACCTCCGATAcctcaaaatattttattgaatagaCAATGTGGATATCTGTTTGAGAACAATAGTAATAGCAGTAGTAGTAATAGTAATTTCTTTGGACCACCGACATCATTTTAttatcataatcatcatcatcatcaacaacaacaacaacagcagcaaccgcAACCGCAACAACCACAGCAATCGTCGCAACAACAacagccgcagcagcagcagcagcagccacaaCAATCACAACATCATACTCATCCACAAAATTACCATCCCTATCATGATCATCCACATGGTGGTAATAACTCTAACATGGGCCAAGCACCAACGCAGCCTCCATTACGACTCTTCTCCTATCAACAACCACCCAAACCGTTGCAACCACCGCCCGCCTATGGCGCAGCCATAAGTCAACTTCGATCTCAAAATAGCCAAAACCTAATGGTAAACAACGTCAATCGGCCACTATATTCGCCGGGAAATTACACACCAACatcattgtcatcatcatcgtcattgtcTCCGTCGTCTACGATACCATCACGTCTGCCGCCGCCTCTACCACCGCCACCTCTAAATCAGCGTTATCAACCTAGCTTCCCACAAATGGAGCCTGCTTTTGTCGATGCATGTGACAATAGTGCTATGTCTCCACGAAGAACATCTATGACACCACCAATTCGAGCTCCTCCTCAATTATATCGTTCGCCATTATCATCCAGCGGACAGTATTCAAGACAGTCAAGCTCCCCCTACTCTGTAATGACGGGTTCACCGTCTGTTTTAAGGTTTGCAGAATCACCCGTTACAGCGCACTATCTGGAGCGAGAAAATGGTGATTTCATTGTTCAAGAGACGCCCAAGCATGTTGTCGAGTGTGTGGAAAAGGACGACGGAGAATTTTCGGTAATCGAACGAGTCTATCATATGCCACCGAGTGTTGTTCAAATTAACGAAGATCAGGACGATGATTTGTCCGATCATGGGTCGAATATTGAGGACATAAAAATGCTAGAGGATGATCGACCAAGCGGAACATGGTCCAGTGGACGGTCGCCAGAACAAGGACAAACAGTGCAGCAGCGACAGCAGAAGAAATCCGGGATTACCGTGCTCAGTGATGTACAATTAGACTTAAATGAATATCTAGACTTAATGGGAAACATAATAGCCTCAAGCAAGGTGGCTAAAACTCGTACTGAAATgataaaaattgagaaattcgAACCTGATGAGGTGAAACAGGAAATAGGAGGCACAAATTGTCGCGACGATAAGGACGACGATGTTTCGCAGGATATTGCAGAACAGACTAAAGGTGAGCAGCAACACTACGGTGATGAGCAAAATTGTTGCTCGTCAGCAGTAACTGCTGCGTCTCCTGCCTCCATACCGGAATCACCCGTAACACCAGGAACAACTAGCGTTATACGATTGGCGGCAAATCCCAATGCAAGAAGCAATACACCCACAATACCAACTAAAGTTGAGGAATCAATGCAGACTGAAACCCCTGAGATATCTACAGCGAAGGTTGAAGGAGCTCCGCAGACATCATGCTTGGGCCTACAAATAACAAAGGTTGAGGGAGCAGTGTTGACAACAATAGCTGATACATCCTCATCAAATGTTGACGAAGTCGTAGCGGCCACAAGCACTAACAAATCTACAGAACCGGTTGAGGAACCAATACCCACAGCAAGCGTCAATATGTTGTcagagaaagccgtggaaggaATACCAACAAAAACCAGCTCCAGTCCACTCGTAACCAAGGTTACAGAAGAAGTGCAATTGACAAGCCCAATCGATTTACAAATCCAACCCCAAGTACCGCTTCCACTGGACGAGGCACCAGAAAAACACGCAACTGCTGAAAAATCTGACAAACATGAAAAACATGAAAAGCaagagaaacaagaaaaacacgAAAAGCTTGTAAAGGAAGAAAAACATGTCAAGAGAGAAGAAAATCCACCCATTCTTGCATATCAGCACCAGTCAATCAAGCGACCAATCAAAAAGGCGCCTAAAAAGCTTATTATTAAACCAAAAAGCAAGGAATCCATAACAGCTCATCCCGCTCCTCAACCTCAAACTGCATCACCAACGCCTACGACTCTTCAAATACCAACGCCATCCACCTCAACGGAGACCATATCCTCGGAACCCCAAAAGGAAGAAGTGATGTGTGAAGTAACTGAAGCAACTCAGACAGAAGAACTAAATATcattaaaacagaaaatttaccaGTTGTATCGAACTCGGTTGCACAGTCTGTCTTGACTGACGTCGAAGAAAAGCTGCCAATCGACGATGATATGCAACCATCTACATCGAATGTGGTGGCTCCCGAGAAGGTAATTGGGCCGCCGAGTGATCCTCCGAAGGAGAAGCCCACCGCTGACTTGACAGCATTCCTCGATCACTGCATGAAAAAAGAAGAGGTTGAAGTGCATCCAATGCACTCAATATTTGGCATGGAAATCGAGGGTCCAGTGGAAAACTTGGATGATTCACTGactccaccgccaccaccagaGTTTCCATCGGCTTCTCTGTTCGCCAAACCGCTGATGAGTTCTGAACATCTATCGATGTCAGAGTCGGTGCTTCCCGATAGCAGTGATATGCAGGAACAGGATCAAAATCaagcacaacagcagcagcagcaaaataaCTCTGCGTATGTTGAATACCCGTTCAGTTTTCTTTACGGTGGAGATGCGAATCACCAAGAGGAGAACAAGCACAGCATCTCACCGCCAATGTATTGCAGTGaagatttcaataaatacaGCGCAAGTACGAGTGGAGGAAACAGTGCCAGTTGCACATGGTATCAGTCGCAAAGTAgtgaaattgattttgaaatggACGGCAAGGGTAGTTATTTGGATTTGGACTCATGCAAGCGAAGTACATCGTTTGCCGCAGCAACTGAGGGCAGTATGCCAACCACAGACACTCTGAACATAAGAACAGACGAGAAGATGCCGGCAAAGGGAGAAATTTCTGAACAGGAGAGCAATTGCGGAGTGGAGAATTCCTGGAGTCAACCGCTCTACAACGAGTTCCCCGTTCGTTTTCCGAATCCTTTTCAAACTTTCATGTCAAACCTTGAGAGCCGGAGCAACGACCACTACTTCCGACCCCAAGATCTGAGCTCATCTGTGGAGATAAAGAACTTTGCATTGCGATTAACCGAGGAATCACCAATTATGGACACGCTACCATCCACGTCAAAGCGAAAGAATAAGGCGCTCATGAAAGTGCCACGCAAGAAAACATTCTCATGTACTCATTGCAATACGCACTTTCCACTACTCAAGGAGAAGAACGCACACTTGATAAAACAGCACGGCTACAAACGTGTAAATCGACGTCTTGTACGTGACCCACCGACTTCAACTGTTACCACGGCGACTATGAATACACTCGATGCAGGTGCCTCTTTGCTGCTTGGTCTGGAACCAACAGCATTACCACCCCCACCGCTGGCCGACGAGGAGGACTCCAAGGCTGCGATTGTAAAAATCGAACAAGAGAATCAAGATCAGAAGGATTGCAAAAAAAGTCTTTCCAGCCTAAAACTAAACACAGCATTGCTGCCCACGAGTGCAAGTATTTCCCGCACCAAGTATGACTCGATGCGAGCACGAGACAATCGCATGCTTATTAATTTCAATCTGAATGCACTGAACGTGAAGAACGAGGGCGAGGTGCACAACTATTACATGGAATCTAAATCATCATTCTGCTGTTTCGTTTGCAGGCGGGACTTTCTAACGGTCAAGCTGTTTGATGAACATTTGGCTGAGCACCCGGCCGAGTGTTTTACATGCCACAAGAAATTCACGAGATGGAAAAACTTTATGGTTCACCTGAAGCGGCATCTCGGCTGGAAAGACTTCGGGTGCACCTTTTGTGAGAAGAAATTTGTAATTCGTAGCGCCTTGGTGGAACACATGCGAATGCATACAGGGCAGACGCCACTAAAGTGTAAGATCTGTGGCAAAAGTTTCAAACGTTATTCCAATCTAACGCAGCACCGAAAGCGACATGGCACTAAAATCAATCGTACCAAGGAGTACGTTTGCTACTGTGGTGAAGTGCTGCCGTCGAAAGCGCGATTTATCTGGCATAAAGAGACGCACGACTTGAAACCGAAATGTTGTCCATATTGCAGAGATCGATTTGTGCATGCGAATAGCTTGCGACGTCACATACGACTGGCGCATTCCGATAAGTTCGACTACACCGAACCAATGGAGTGTCCGATGTGCAAGCAAATTTACGCCAAATCTAGCATTAAAGCGCATATGGCAACGCATTCGATGGACACACAGCACGAATGTCTGATTTGCAACAAATCTTTCAGCACCAAGTGGAATCTGAAAATTCACAATTGGGTCCACGCGAATCGTACGACAAAACCCTACAAATGTGATCAATGCGTAAAAGCGTTTGTGCGCGAAGTGGACTATAACAATCACATGAACTCGCACAAGCAAATAAAGCCATATACGTGCGAACATTGCGGCTGCAAGTTCATACGCAAATACAATTATATACGACATCGGCGTGAGCATCACGGGAATAAGAAATTCACCTGCGATCTCTGCGGAAAGCTCTTCCATCGGCATTATTATCTAATCGAACACCGGCGTATCCACACTGGCGAGCGACCATTCCAGTGCACGATATGTGGCAAAAGTTCCACGACGAAGACGAACCACAACAAACACCTAAAGATTCATCATTCGCGTGATCCGTTCACATCGGAGGCGTAA
- Protein Sequence
- MGGNVQCPVCTLFLLPGMDLSDHLETHPKEQVIKALVQLSLKSEVSETVTPDTPKKVNKTPFIENGINHQTTDDERATPMSEISGSGSNSTALTVGVHETRREVEDNNPLPPIPQNILLNRQCGYLFENNSNSSSSNSNFFGPPTSFYYHNHHHHQQQQQQQQPQPQQPQQSSQQQQPQQQQQQPQQSQHHTHPQNYHPYHDHPHGGNNSNMGQAPTQPPLRLFSYQQPPKPLQPPPAYGAAISQLRSQNSQNLMVNNVNRPLYSPGNYTPTSLSSSSSLSPSSTIPSRLPPPLPPPPLNQRYQPSFPQMEPAFVDACDNSAMSPRRTSMTPPIRAPPQLYRSPLSSSGQYSRQSSSPYSVMTGSPSVLRFAESPVTAHYLERENGDFIVQETPKHVVECVEKDDGEFSVIERVYHMPPSVVQINEDQDDDLSDHGSNIEDIKMLEDDRPSGTWSSGRSPEQGQTVQQRQQKKSGITVLSDVQLDLNEYLDLMGNIIASSKVAKTRTEMIKIEKFEPDEVKQEIGGTNCRDDKDDDVSQDIAEQTKGEQQHYGDEQNCCSSAVTAASPASIPESPVTPGTTSVIRLAANPNARSNTPTIPTKVEESMQTETPEISTAKVEGAPQTSCLGLQITKVEGAVLTTIADTSSSNVDEVVAATSTNKSTEPVEEPIPTASVNMLSEKAVEGIPTKTSSSPLVTKVTEEVQLTSPIDLQIQPQVPLPLDEAPEKHATAEKSDKHEKHEKQEKQEKHEKLVKEEKHVKREENPPILAYQHQSIKRPIKKAPKKLIIKPKSKESITAHPAPQPQTASPTPTTLQIPTPSTSTETISSEPQKEEVMCEVTEATQTEELNIIKTENLPVVSNSVAQSVLTDVEEKLPIDDDMQPSTSNVVAPEKVIGPPSDPPKEKPTADLTAFLDHCMKKEEVEVHPMHSIFGMEIEGPVENLDDSLTPPPPPEFPSASLFAKPLMSSEHLSMSESVLPDSSDMQEQDQNQAQQQQQQNNSAYVEYPFSFLYGGDANHQEENKHSISPPMYCSEDFNKYSASTSGGNSASCTWYQSQSSEIDFEMDGKGSYLDLDSCKRSTSFAAATEGSMPTTDTLNIRTDEKMPAKGEISEQESNCGVENSWSQPLYNEFPVRFPNPFQTFMSNLESRSNDHYFRPQDLSSSVEIKNFALRLTEESPIMDTLPSTSKRKNKALMKVPRKKTFSCTHCNTHFPLLKEKNAHLIKQHGYKRVNRRLVRDPPTSTVTTATMNTLDAGASLLLGLEPTALPPPPLADEEDSKAAIVKIEQENQDQKDCKKSLSSLKLNTALLPTSASISRTKYDSMRARDNRMLINFNLNALNVKNEGEVHNYYMESKSSFCCFVCRRDFLTVKLFDEHLAEHPAECFTCHKKFTRWKNFMVHLKRHLGWKDFGCTFCEKKFVIRSALVEHMRMHTGQTPLKCKICGKSFKRYSNLTQHRKRHGTKINRTKEYVCYCGEVLPSKARFIWHKETHDLKPKCCPYCRDRFVHANSLRRHIRLAHSDKFDYTEPMECPMCKQIYAKSSIKAHMATHSMDTQHECLICNKSFSTKWNLKIHNWVHANRTTKPYKCDQCVKAFVREVDYNNHMNSHKQIKPYTCEHCGCKFIRKYNYIRHRREHHGNKKFTCDLCGKLFHRHYYLIEHRRIHTGERPFQCTICGKSSTTKTNHNKHLKIHHSRDPFTSEA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01542476;
- 90% Identity
- iTF_01542476;
- 80% Identity
- -