Basic Information

Insect: Xylota sylvarum
Gene Symbol: RREB1
Assembly: GCA_905220385.1
Location: LR999957.1:111655111-111660842[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 0.03 3.6 8.8 0.8 1 21 231 251 231 253 0.93

2 14 0.00028 0.034 15.2 0.2 1 23 263 285 263 285 0.98

3 14 8.1e-06 0.00097 20.1 5.2 1 23 291 313 291 313 0.98

4 14 0.025 3 9.1 2.5 2 19 510 527 510 527 0.97

5 14 3.9 4.7e+02 2.2 0.6 1 19 573 591 573 593 0.78

6 14 0.0075 0.9 10.7 0.1 1 23 745 767 745 767 0.97

7 14 0.00015 0.018 16.0 1.7 1 23 776 798 776 798 0.99

8 14 0.00039 0.047 14.7 2.0 1 23 804 827 804 827 0.97

9 14 0.0008 0.096 13.8 2.1 1 23 1171 1194 1171 1194 0.95

10 14 7.2e-05 0.0087 17.1 0.3 2 23 1491 1512 1490 1512 0.97

11 14 0.12 15 6.9 6.3 1 23 1518 1541 1518 1541 0.97

12 14 2.5 3.1e+02 2.7 6.3 1 23 1642 1664 1642 1665 0.95

13 14 0.0071 0.85 10.8 0.5 3 23 1714 1734 1712 1734 0.96

14 14 0.0012 0.14 13.2 4.8 1 23 1740 1762 1740 1762 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	0.03	3.6	8.8	0.8	1	21	231	251	231	253	0.93
2	14	0.00028	0.034	15.2	0.2	1	23	263	285	263	285	0.98
3	14	8.1e-06	0.00097	20.1	5.2	1	23	291	313	291	313	0.98
4	14	0.025	3	9.1	2.5	2	19	510	527	510	527	0.97
5	14	3.9	4.7e+02	2.2	0.6	1	19	573	591	573	593	0.78
6	14	0.0075	0.9	10.7	0.1	1	23	745	767	745	767	0.97
7	14	0.00015	0.018	16.0	1.7	1	23	776	798	776	798	0.99
8	14	0.00039	0.047	14.7	2.0	1	23	804	827	804	827	0.97
9	14	0.0008	0.096	13.8	2.1	1	23	1171	1194	1171	1194	0.95
10	14	7.2e-05	0.0087	17.1	0.3	2	23	1491	1512	1490	1512	0.97
11	14	0.12	15	6.9	6.3	1	23	1518	1541	1518	1541	0.97
12	14	2.5	3.1e+02	2.7	6.3	1	23	1642	1664	1642	1665	0.95
13	14	0.0071	0.85	10.8	0.5	3	23	1714	1734	1712	1734	0.96
14	14	0.0012	0.14	13.2	4.8	1	23	1740	1762	1740	1762	0.99

Sequence Information

Coding Sequence: atgttgaaaacaTCAATTAAAAAGCAATTAACCGAAATTTCATTACGAAAAATGGATCGACGTGAATCGACAACATCGGATTCATCCGTTGAACCCATGGATTTAGGCCGAACATCGATAgacattaaaaaagaaaataacaacacAGCATTGCAATTGCCAACAGCTACACTTAAAGATGCCATTTTAACCGATGCCAATACAAAATTCACCGTACGTCATGAGTCTGATGCCGACGAATCAGACGACAGAGATAGGGATAACCAGCGACGATCGCACAGTCAACATCATTACCATCATCGTCGGCGTGGTAATAGTGGCCGTGACAAACGTACCGTCCATTTAGAGTGCACCGATAGTCCACATTCGTTGCGAAAGAAATTTCGCTTCAGTAACAATAATCATAATGTTCCAGAATCTGTGATCAatctgaaacaaaaaacatcgaACAACGATTCCAcaaaatcatcatcaacaacaacagcaacaaatatAACCGCAACAACGAACAACAATGAATCTGGGTTTGTTGATGCAAGCAGTAGCCATGTACTAAACACATCCACATCATCAGCAGCATCTTCATCGTCGTCGCCGACATCATCAACGTCTGCTTCACCATCTGCCAGTAACATCGCATCAGCCGTTTCCAGTCCCGAATCGGGCATGGGTGAACGTGACGACATGAAGTACCTTTGCCCAATTTGTGAGGTGGTATCGGCGACACCGCATGAATTTACCAATCACATTCGATGTCATAATTATTCATCTGGGGACACCGAAAATTTCACCTGCCGCATTTGCTCCAAGGTTCTATCATCTGCGTCATCGCTGGATAGGCACGTGCTGGTGCATACTGGCGAGCGGCCCTTCAACTGCAAATATTGCCAGCTAACTTTTACCACAAACGGCAATATGCATCGCCACATGCGAACCCACAAACAACATCAGCAACACTATCATCGAAATTCAAATGGCAACAAGGGTGGTGCAGGTAGTGGTGGTGCCTCCAATTTGATTCCAATTTTACCATCAACCGACCAATCGACTGCAGCTACAACAGCAAACACCGTGCCCTCCAAAGCGACAAACCAAAGCAATGGTGTTGTTATTAATAGCAATGGTGACACAATtgcgggtggtggtggtggcgaaaGCTACGAAAGTGATGGTGGTTGCTCAACGGATTCATCAAGTGCCATCAGCCAAAGttccaataacaataacaacagcaataccaacaacaaaaacattaGTAATTTTAAGCGCAAGAGCACCGACAGTTTGGATGACATGACCGTGATGAAACGACGCGTGAAGACcaccatcaacaacaacaatatcGTCGATAATATGCACGCAGTTGTCGCCGAAAAGAATGCTATCGAAGAAGCTGATGAAGACATCAAGCAgcagcaccaacagcagcagcagaaacTGTTTTGCCCTGTGTGCAATCGTAATGACTTTATGGGGATGCTTTCATTGGGCGCTCACATGGACTGCGAGCATTCAGATATTCCAGCAAAGTGTCGTCATTGTGATGTTGTTTTCAAAACCCATAAACAGTTGAACATTCATCCATGCACGAGTAAGCTTAAAATAACGCACGGCTTCAAGGATCTTACATTTGTTGACTTTTCGAGTGAGAAGTTCCCGCTAATTGCTAAGTCTCTGTGTGAGCAGAGTCTTCGAACTCCAATAAGCAGTCAGAAGTTTGAATGCTCGAAATGTTATAGGGCGTTTCCGTGTGCCAGCGCGGTCGAGATTCATGAGAAAGATTGCGCCACATCAGGGATGAATTTGTTTGTTGATGCGCATGATTTTTCGATTCGCAAGCAGAGGGCTTATAGTGAGAGCTCTGGAggcgctgatgatgatgataatcgACGGGAGGAATTCTTTGCACGAttatatttgaaaaacaaatcTACTGCACAAAGCATGACTAGTCTATCGATATCCTCACCATCACTGTCCGATGTTAAATCGTCTGAGTTGGATAAGACGCCGGTGAAGATGTCCCAGTTGGATCAGTACCAGGACACCAAGGAGCTTGCCGATATTCAGTCGATTCTCAATATAACTTCATCCTCGTCGACAAGCAATTTTCTACGTAATTTCGAGAGCTCGGTGAATGCACCAATCAGTAATTACGGAGCCGAAAACGGCGAAGAAGAGGCTCAGGACGCATTTACCTCGGAGTTTCGTAAAATGAAGCTGCGCGGAGAGTTTCCATGCAAGCTATGCACGGCAGTTTTTCCGAATCTGCGTGCACTGAAGGGACACAATCGCATTCATCTCAGTGCGGCGGGTCCAGGCCCATATCGTTGCAATATGTGCACATATTCGATTCATGATAAGGCGGCTCTGGTTCGTCACATGCGTACACATAACGGTGACAGGCCATACGAGTGCGCCATTTGCAATTATGCATTCACAACGAAGGCCAACTGTGAGCGACATTTGCGCAATCGTCATGCCAAGACCACACGTGACGAAGTGAAGCGCGCTATTATCTATCATCCATCAGAAGACTCTAACTGCGATGATGCCATGAAGAAGATGCACATGTTCTCCTCGCCCGAATTCGATCAAGACGATATGGAGCAACATCATCCGCCAAAGGACCGCTCGACTCCGGTTTCCCATCTGAAGGAAATGCTTCAAGCCGAATCCAAGCCACTCAAGATCCAAGTAAAGAGCTTGGAAAAGTTAATCGACAAAACGCAATCATCATTCAGTCAGTCTGAAGAAATGGAAAAGGAGCAAGAGCCGGAGGAATCCCAGCACGATAAAGTCAGTCGACCAATTGACCTTAGCATGGATGCATTGGATTTGAGCAAAAAGTCTTTAAAAACACCAAAAGTTGAGGAGAAGCCAACGCAATCTCCGCCACCATCGCAAGCAATGTCGGCGCGTACACAGCCCGAAGAAACAAACATCGATATGCGGGTTTTGGAGAAGAACCAACAGCTTTTACTTGCACAACAGCGGTTATTAAACGAAGCGATGCCAAAGATGGATCCTGCACACTATTTCCAATTGTCGCAGCTCTATAGAAATTTGGTATTTCAGCCGCTACCCTTTTTCCTCCAGAACTCGTTTCTTTCGAACAACATGGGTGATCTAAATAAGTTCGCTCCGCTCATGAATCCAATGTTTGAACATGCCACGGGTAATGAGACcgcctcaaccaacaaccaTAACCAAAGTATGCCACCAAAGCCGTCCCCCGAAGAGGGTGCCAATTTATTGCTGAAACAGTCTATTTCGCGAGCCCATTCACCAATTCCTGCTAAGAGCCAACTCTTACCACGTAACCTCACTCCGTCCTCGTCACAAATGCCCCCTATGCCTCCACGAAACCATTCCCATTTGGTGACGGGCACGCATTCCTCAGGAATGCTCCCATCGTCCGTGCCGAATTCGGGACCAGTGAAAATGGTCATCAAAAACGGTGTGCTTATGCCGAAACAGAAGCAACGACGCTATCGCACCGAACGCCCCTTTGCATGTGAACACTGTTCCGCCCGTTTCACCCTGCGTTCCAACATGGAACGCCACATCAAGCAACAACATCCGCAATATTGGGCTCAACGACAACGAAGTGGCCATCACATAATGCGTGGTCGTGCCAACAGCTCTTCTCTCCTCTCCCATATGCCGCCGACGCATTCGGCATTGGAAGCCCCTCATCAAATTGGCGGCAGTGGGATAATGAGTGCCATCTCAGATCAAGTGAAATTCGCCATACTTAGCCAACAGCTAAAGGCCCGTAAGGAGACAGACATTCTACAGCAAGCTTTGTCACAAGGCTCAAGCAGTGTGTTGGCGCataatcctcccactgccataAGCGATCTTCGTAAATCACTCAGTTCTTCGTCGAACACAAACAACGGCAGCATCGAAGATGATGATCCAAAATTAATAATCGACGAAGATGAAGAAAAGGAGGACGACGAAGATGAGCTAGAGGATCGAAAACCtgaaaatttaccaaaaatcgAAGACCTTCAGCAGGATCCAACACCTAACGAGGCTGCAAAGAAAGTGGCTGAATCGATTTTGGAGCAGGCAATGAAAGCTACCGGTACCAAAAGTACATACCCTTCTGGTGAAGATCGTTCGGTAGGTAAAGATTTCGGACTCAAATTGTCCAAAAATATGATTGCTCAAGCCGAGTCGGTGGGAAAGTTTCTCAAAGAAGTGGCCAGTTCTCCATTTAAGGATGAATCCAACGATTTAGCGTCCGTCTCAAGGCTGGTTGATAATGCCACCAATTCGATGTCGTTCAACAACTACTTTCGGCCTAGCGATGTGGTGAATCAAATGGAACAAAGTGATGAAGAAGGTTTGGTCGCATCCGGCAGTGCATCAGAAAGCAATAATTCGGGCCCTGAAGATATGGCTAACTCACAGGAACCAAAGAAAAAGTCAGCTTACAGTTCGGCTCCCAATCGTGTCTCGTGCCCCTATTGTCAGCGAATGTTCCCCTGGTCTAGCTCACTGCGACGGCATATTCTGACTCACACTGGCCAAAAACCATTTAAATGCTCCCATTGTCCTCTGCTCTTCACCACCAAAAGCAATTGCGATCGTCATCTTCTGCGAAAACACGGAAATGTGGAATCCGCTGTCTCGTTATATGTTCCCATTGAGGATGTCAATGAACCGTTACCAGTTCCGAAGTCTATCGAGGAGATCGaaatgcaacagcaacaacaaatgctgcagcagcaacaacagaaaaaacttGAAGAGCAAAAGGAGCTGGAGAAAGTTCAACAGTCACAACAACAGCAGAAACCAGCGGTCCTAGAAAATTCGGAAACACCGATTCCGAGTTTGAGTTCAGCACCAGCGACTGTAGGTAAAGTGGAACCGATTCCACAAATAGTTTCATCGTCTGAATTACCCTTCAAATGTCACCTCTGTGACAGCTCGTTTGCTGAGCGGTTTCAGTGCCTCGATCACATCAAGATCCATCATGCTCAAGAATTCGCCCTGCTACTGTCCAAGGGCGCCATCGACAACGAAGCCGATCCTAACAATCAAGTGCAGTCAACCGAGGACGATGAAAAACGCGACGAAAGTCGTGGTAAATATCCCGACTACACCAATCGCAAGGTCATCTGCGCCTTCTGTGTACGACGGTTTTGGTCCACTGAAGATTTGCGTCGTCACATGCGGACTCACTCTGGGGAGCGGCCATTTCAATGTGACATTTGCCTGCGTAAGTTTACCCTGAAACACAGCATGCTACGCCACATGAAGAAACATAGCGGTGGAGGTCATTCTAGCAACGGAAACGCGAACGCCACCAACAGTGGCTCTGATATATCCGACGATGAACAACCGCCATCTAATGTAATGCTAGCTACTACTCTACGCTCTCATAAATTCCAGGAGCTCTTTGCGAAGGCCAACAGCGAATGGCGTAACAATCGCCTATCTGGCGAGCACAAGGAGAACATCGAAGAGCACAATAACCAATCCGATCTAATTGGCAACCTTCTTGGCATCAGTGACCAAGGAATCCTTAACAAGCTTCTCTCGTCAGCCGACGAAGCTGCCAAGTTCCTTGGCGTTGAGAAGTAA
Protein Sequence: MLKTSIKKQLTEISLRKMDRRESTTSDSSVEPMDLGRTSIDIKKENNNTALQLPTATLKDAILTDANTKFTVRHESDADESDDRDRDNQRRSHSQHHYHHRRRGNSGRDKRTVHLECTDSPHSLRKKFRFSNNNHNVPESVINLKQKTSNNDSTKSSSTTTATNITATTNNNESGFVDASSSHVLNTSTSSAASSSSSPTSSTSASPSASNIASAVSSPESGMGERDDMKYLCPICEVVSATPHEFTNHIRCHNYSSGDTENFTCRICSKVLSSASSLDRHVLVHTGERPFNCKYCQLTFTTNGNMHRHMRTHKQHQQHYHRNSNGNKGGAGSGGASNLIPILPSTDQSTAATTANTVPSKATNQSNGVVINSNGDTIAGGGGGESYESDGGCSTDSSSAISQSSNNNNNSNTNNKNISNFKRKSTDSLDDMTVMKRRVKTTINNNNIVDNMHAVVAEKNAIEEADEDIKQQHQQQQQKLFCPVCNRNDFMGMLSLGAHMDCEHSDIPAKCRHCDVVFKTHKQLNIHPCTSKLKITHGFKDLTFVDFSSEKFPLIAKSLCEQSLRTPISSQKFECSKCYRAFPCASAVEIHEKDCATSGMNLFVDAHDFSIRKQRAYSESSGGADDDDNRREEFFARLYLKNKSTAQSMTSLSISSPSLSDVKSSELDKTPVKMSQLDQYQDTKELADIQSILNITSSSSTSNFLRNFESSVNAPISNYGAENGEEEAQDAFTSEFRKMKLRGEFPCKLCTAVFPNLRALKGHNRIHLSAAGPGPYRCNMCTYSIHDKAALVRHMRTHNGDRPYECAICNYAFTTKANCERHLRNRHAKTTRDEVKRAIIYHPSEDSNCDDAMKKMHMFSSPEFDQDDMEQHHPPKDRSTPVSHLKEMLQAESKPLKIQVKSLEKLIDKTQSSFSQSEEMEKEQEPEESQHDKVSRPIDLSMDALDLSKKSLKTPKVEEKPTQSPPPSQAMSARTQPEETNIDMRVLEKNQQLLLAQQRLLNEAMPKMDPAHYFQLSQLYRNLVFQPLPFFLQNSFLSNNMGDLNKFAPLMNPMFEHATGNETASTNNHNQSMPPKPSPEEGANLLLKQSISRAHSPIPAKSQLLPRNLTPSSSQMPPMPPRNHSHLVTGTHSSGMLPSSVPNSGPVKMVIKNGVLMPKQKQRRYRTERPFACEHCSARFTLRSNMERHIKQQHPQYWAQRQRSGHHIMRGRANSSSLLSHMPPTHSALEAPHQIGGSGIMSAISDQVKFAILSQQLKARKETDILQQALSQGSSSVLAHNPPTAISDLRKSLSSSSNTNNGSIEDDDPKLIIDEDEEKEDDEDELEDRKPENLPKIEDLQQDPTPNEAAKKVAESILEQAMKATGTKSTYPSGEDRSVGKDFGLKLSKNMIAQAESVGKFLKEVASSPFKDESNDLASVSRLVDNATNSMSFNNYFRPSDVVNQMEQSDEEGLVASGSASESNNSGPEDMANSQEPKKKSAYSSAPNRVSCPYCQRMFPWSSSLRRHILTHTGQKPFKCSHCPLLFTTKSNCDRHLLRKHGNVESAVSLYVPIEDVNEPLPVPKSIEEIEMQQQQQMLQQQQQKKLEEQKELEKVQQSQQQQKPAVLENSETPIPSLSSAPATVGKVEPIPQIVSSSELPFKCHLCDSSFAERFQCLDHIKIHHAQEFALLLSKGAIDNEADPNNQVQSTEDDEKRDESRGKYPDYTNRKVICAFCVRRFWSTEDLRRHMRTHSGERPFQCDICLRKFTLKHSMLRHMKKHSGGGHSSNGNANATNSGSDISDDEQPPSNVMLATTLRSHKFQELFAKANSEWRNNRLSGEHKENIEEHNNQSDLIGNLLGISDQGILNKLLSSADEAAKFLGVEK*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01223735;
90% Identity: iTF_01541676;
80% Identity: -