Basic Information

Insect: Xylota sylvarum
Gene Symbol: su(Hw)
Assembly: GCA_905220385.1
Location: LR999958.1:23077098-23080607[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 0.00078 0.094 13.8 1.3 1 21 127 147 127 148 0.94

2 13 5.9e-06 0.00072 20.5 0.3 3 23 199 220 197 220 0.92

3 13 0.034 4.1 8.6 0.2 1 23 226 248 226 248 0.95

4 13 3e-05 0.0037 18.2 4.6 1 21 255 275 255 276 0.94

5 13 5.3e-07 6.3e-05 23.8 0.7 2 23 288 309 287 309 0.97

6 13 0.00016 0.019 16.0 6.2 1 23 320 342 320 342 0.99

7 13 1.3e-05 0.0016 19.4 1.1 1 23 348 370 348 370 0.97

8 13 8.4e-06 0.001 20.0 0.6 1 23 376 398 376 398 0.99

9 13 7.9e-07 9.5e-05 23.2 2.8 1 23 404 426 404 426 0.98

10 13 2.1e-05 0.0025 18.7 1.8 1 23 430 452 430 452 0.98

11 13 0.056 6.8 8.0 0.6 2 23 462 485 461 485 0.87

12 13 2.1 2.5e+02 3.0 3.2 2 23 492 514 491 514 0.89

13 13 0.00034 0.041 14.9 0.4 3 23 518 539 517 539 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	0.00078	0.094	13.8	1.3	1	21	127	147	127	148	0.94
2	13	5.9e-06	0.00072	20.5	0.3	3	23	199	220	197	220	0.92
3	13	0.034	4.1	8.6	0.2	1	23	226	248	226	248	0.95
4	13	3e-05	0.0037	18.2	4.6	1	21	255	275	255	276	0.94
5	13	5.3e-07	6.3e-05	23.8	0.7	2	23	288	309	287	309	0.97
6	13	0.00016	0.019	16.0	6.2	1	23	320	342	320	342	0.99
7	13	1.3e-05	0.0016	19.4	1.1	1	23	348	370	348	370	0.97
8	13	8.4e-06	0.001	20.0	0.6	1	23	376	398	376	398	0.99
9	13	7.9e-07	9.5e-05	23.2	2.8	1	23	404	426	404	426	0.98
10	13	2.1e-05	0.0025	18.7	1.8	1	23	430	452	430	452	0.98
11	13	0.056	6.8	8.0	0.6	2	23	462	485	461	485	0.87
12	13	2.1	2.5e+02	3.0	3.2	2	23	492	514	491	514	0.89
13	13	0.00034	0.041	14.9	0.4	3	23	518	539	517	539	0.97

Sequence Information

Coding Sequence: ATGAACAACAATGTTTCGCCCAAGAGGATTGCCAGGACTACCAGATCGAAAAGAAATCTAACTTCAGATTCCAGTAGTAGTAGTGCAATCCTTCTGAATGCCAGAAAATCACTAAGACCGGCAAAGGATGCCAGGAAAAGCGAACCTAATCCAGATGTTGAAATTGTCACCCCAGATCCAACAGGATTAACTGATCACTACCTTTTAACGGAAATCAAAGGCGATAAAGATGAGAATGAGATTGATTTTGTTCTAACAGAAAAACGCTTTGAAGAAGGTACACAACCCGCAGAATGTCgagaagaaattgaaaattgggAAGAAGGTGGTGATatcgatgacgatgatggtaaTGTTAACACAAAGGAGATTGTCGAACATGTTTGCGGCAAATGTTACAAGTCATTTCGTACCATAAAGGTTTTAAAACGTCACATGGAGTACTGTATCTTCAATAGCGACATGGTATTGCGAAGAGCAGAAATGCAAAATAACATAGAAAAGATCGAGAAAGAGGCGATTATTATGGAAAAGAAGGACATTTGCTTCTGCTGTGGTGATAGCTATGATACTTGTCACTTGGGCCATATAAATTGCACCGAATGtccaaaaacatttaaaacgcAAATTAGTCTTGAACGCCACATTTTTCTCGTTCATTCGGAACATAATGATTTTCCCTGTGACATCTGCAATGGTCGCATTCGAACGGAATCGTTATTGAAATTGCATAAGGAACAACATAAGAACCGCGGCAAACCATTCGCTTGCCGGCAATGTGGTAAGGATTTTACGCGACAATACCACTTGAAGAGACACCATAAGTATTCGTTGTGTGGTAATGGTAAAGCTGAAATGATGCAGTGTAAAGTGTGTGGAAAGGAATTCTATCGACTGGATAATTTACGTGTGCATTTGAAATCACACTTGGGTCATGGTACGCCCAAGAAACCAGAATATACATGCCCCTGCTGTAAGAAATGTTTCTATAGTTTGTCAACATTAAATATTCATATTCGAACACATACGGGTGAGCGACCTTTTGATTGTGACCTTTGTGACAAGAATTTTCCGTCGCTAGTTTCATTGAAGAAGCACCGAAGATACCACACTGGGGAGAAGCCATATACTTGTGAAGTGTGCCAACAAACCTTTGCTGTCAAAGAGGTTCTCAACAGACATATGAAACGACATACCGGACAGAAGCCACACGTTTGCACTCAATGCGATAAACGTTTCATTCAAGCCACCCAGTTGAAAAATCATTTGCGTACACACCTACGGCCATACGAATGTACAATATGTCCAGAGAAATTCAAAACTGAAAAACAATTCGAAAAGCACTTCAGATTACACACAAAAAAGACAGGTGGgtctcaaaaaaaatgcattgatTGCAATTTGGTATTTAAAAGTCGCCCCGTTCTATTAAGACACCTGAAGTCTGTTAAACATATAGAAAACGCTGTCAAAACATGTGTTCAATGTGGTGAGAAATGTTCAAATACAAAATCTCTGGAATTTCATAAGCTTAAGGAGCATACAAACAATTGTGGTTATTGCAGAATGTCGTTTGTGCAATTTAATCAGTTAGAAGAGCACATTAAAACTGCGCACAAGGATAATACCGATCCCAAAGATGAGCCAATACCAACAGTCGAACCAGTCAAGACAGAAGATCAAAATTGTTTCATTATTGAGGAGTATATTGTGGACTCGTTTGCTCCAGGATTTGAAGCACCAACGAGCTCAGTACAGGATTTTACCATAATTGCTAAAGATAACCAAGTTTCACCAGAATTCGAGAAAGTCAAGAATGTAATAAGCAAAAGAACACCTGATCTAAGAGCTGAGTTAAAAAAGTCTCTAGCGAATTGCTTACAAGACGAAACCCCAAAAAACGTAAGCGACAAAGCCATGAATGATGAGGATGTACAAATCTCCGAAAAAGTTGGTAAATTACTGGATATGCTAGTGGATGTAGAGACGCTTGTAAAATTTGGCTGGCCCGAGGATGCTGTTGAGAATgTACTATGTAAGGTGATCGAAAATTGTGGCTATAATCTGTACAAGACAAAGTTCACCGAGGATTATGGCACAAGGATGAGGGAGTTTGTAAAACTTCTGTTTACCGTAGTCATTCAAAATGATTCAATCAAGGAGCTactgaataatttttcaatcGATGAAGTTATTGATTATGTTCTttctaatgatgatgatgattaa
Protein Sequence: MNNNVSPKRIARTTRSKRNLTSDSSSSSAILLNARKSLRPAKDARKSEPNPDVEIVTPDPTGLTDHYLLTEIKGDKDENEIDFVLTEKRFEEGTQPAECREEIENWEEGGDIDDDDGNVNTKEIVEHVCGKCYKSFRTIKVLKRHMEYCIFNSDMVLRRAEMQNNIEKIEKEAIIMEKKDICFCCGDSYDTCHLGHINCTECPKTFKTQISLERHIFLVHSEHNDFPCDICNGRIRTESLLKLHKEQHKNRGKPFACRQCGKDFTRQYHLKRHHKYSLCGNGKAEMMQCKVCGKEFYRLDNLRVHLKSHLGHGTPKKPEYTCPCCKKCFYSLSTLNIHIRTHTGERPFDCDLCDKNFPSLVSLKKHRRYHTGEKPYTCEVCQQTFAVKEVLNRHMKRHTGQKPHVCTQCDKRFIQATQLKNHLRTHLRPYECTICPEKFKTEKQFEKHFRLHTKKTGGSQKKCIDCNLVFKSRPVLLRHLKSVKHIENAVKTCVQCGEKCSNTKSLEFHKLKEHTNNCGYCRMSFVQFNQLEEHIKTAHKDNTDPKDEPIPTVEPVKTEDQNCFIIEEYIVDSFAPGFEAPTSSVQDFTIIAKDNQVSPEFEKVKNVISKRTPDLRAELKKSLANCLQDETPKNVSDKAMNDEDVQISEKVGKLLDMLVDVETLVKFGWPEDAVENVLCKVIENCGYNLYKTKFTEDYGTRMREFVKLLFTVVIQNDSIKELLNNFSIDEVIDYVLSNDDDD*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01541600;
90% Identity: -
80% Identity: -