Basic Information

Insect: Xylota segnis
Gene Symbol: su(Hw)
Assembly: GCA_963583995.1
Location: OY757236.1:29279937-29283032[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 0.00082 0.062 13.8 1.3 1 21 129 149 129 150 0.94

2 13 4e-05 0.0031 17.9 0.6 3 21 201 219 199 222 0.88

3 13 0.035 2.6 8.7 0.2 1 23 228 250 228 250 0.96

4 13 3.2e-05 0.0024 18.2 4.6 1 21 257 277 257 278 0.94

5 13 2.4e-07 1.8e-05 24.9 0.7 2 23 290 311 289 311 0.98

6 13 0.00016 0.012 16.0 6.2 1 23 322 344 322 344 0.99

7 13 4.9e-05 0.0037 17.7 1.0 1 23 350 372 350 372 0.97

8 13 8.7e-06 0.00066 20.0 0.6 1 23 378 400 378 400 0.99

9 13 8.3e-07 6.3e-05 23.2 2.8 1 23 406 428 406 428 0.98

10 13 2.2e-05 0.0017 18.7 1.8 1 23 432 454 432 454 0.98

11 13 0.022 1.7 9.3 1.2 2 23 464 487 463 487 0.90

12 13 0.17 13 6.5 2.6 2 23 494 516 493 516 0.95

13 13 0.0013 0.1 13.1 0.2 3 23 520 541 519 541 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	0.00082	0.062	13.8	1.3	1	21	129	149	129	150	0.94
2	13	4e-05	0.0031	17.9	0.6	3	21	201	219	199	222	0.88
3	13	0.035	2.6	8.7	0.2	1	23	228	250	228	250	0.96
4	13	3.2e-05	0.0024	18.2	4.6	1	21	257	277	257	278	0.94
5	13	2.4e-07	1.8e-05	24.9	0.7	2	23	290	311	289	311	0.98
6	13	0.00016	0.012	16.0	6.2	1	23	322	344	322	344	0.99
7	13	4.9e-05	0.0037	17.7	1.0	1	23	350	372	350	372	0.97
8	13	8.7e-06	0.00066	20.0	0.6	1	23	378	400	378	400	0.99
9	13	8.3e-07	6.3e-05	23.2	2.8	1	23	406	428	406	428	0.98
10	13	2.2e-05	0.0017	18.7	1.8	1	23	432	454	432	454	0.98
11	13	0.022	1.7	9.3	1.2	2	23	464	487	463	487	0.90
12	13	0.17	13	6.5	2.6	2	23	494	516	493	516	0.95
13	13	0.0013	0.1	13.1	0.2	3	23	520	541	519	541	0.96

Sequence Information

Coding Sequence: ATGCGACGAAGGGCATATCTTTCTACTACTACTCGTGCTGTGCATGGTATATTCCTTGCACGAATGAAAGAGTCCAGCACTACTAGTGCAGTACTTCTGAATACCAGAAAATCGCTAAGATCTGCAAAGGAAGCTAAGAAAAGTGAACCTGATCCGAATGTTGAAATTGTTACCCCAGATCCAACAACCGGACTGACTGATCACTACCTTTTAACGGAAATCAAAGGCGATGCGGATGAGAATGAGATCGATTTTGttctaacaaaaaaacgctttgAAGAGGGCACACAACCGGCTGAATGTCgagaagaaatagaaaattgggaagaagttggtgaaatcgatgacgatgatggtaaTGTCAAGACAAAGGAGATTGTCGAACATGTCTGTGGCAAGTGTTACAAATCGTTTCGTACGATAAAGGTTCTAAAGCGCCACATGGAGTACTGTATCTTCAACAGCGACATGGTGTTACGAAGGgccgaaatgcaaaataatatagAAAAGATCGAGAAGGAGGCAATTATTATGGAAAAGAAGGACATTTGCTTCTGCTGTGGTGATAGCTATGATACCTGTCACTTGGGGCACATAAACTGCACTGAATGTCCGAAAACCTTTAAAACGCAAATTAGCCTTGAACGGCATTTTTTCCTCGTTCATTCGGAAAACAATGATTTTCCCTGTGACGTCTGTAATGGTCGCATTCGAACGGAATCGTTGTTGAAACTGCATAGGGAGCAACATAAGAAACTCGGCAAACCGTTTGCTTGCAGACAATGCGGCAAAGATTTCACGAGGCAGTACCACTTGAAGAGACATCATAAGTATTCGTTGTgtggtaatggtaaagctgaaatGATGCAGTGTAAGGTTTGCGGAAAGGAATTCTATCGATTGGACAACTTACGTGTGCATTTGAGATCACACTTGGGTCAGGGTACGCCCAAGAAACCAGAGTACACATGCCCCTGTTGTAAGAAATGCTTCTATAGTTTGTCAACATTAAATATTCATATTAGAACACATACGGGTGAGCGTCCTTTTGATTGTGACCTTTGTGAAAAGAATTTCCCGTCGCTGGTTTCACTAAAGAAGCATCGAAGATACCACACTGGCGAAAAGCCCTACACTTGTGAAGTGTGCCAACAAACCTTTGCTGTCAAAGAGGTTCTCAACAGGCATATGAAACGGCACACCGGCCAGAAGCCACACGTTTGCACTCAGTGTGATAAACGTTTCATTCAAGCCACTCAGTTGAAAAATCATTTGCGTACACACCTTCGGCCATATGAATGCACAATATGTCCAGAGaaattcaaaactgaaaaacaATTCGAAAAGCACTTTCGATTGCACACAAAAAAGACGAGTCGGACTCAAAAAAAGTGCACTGACTGTGATCTGGCATTCAGAAGTCACCCTATTCTATTAAGGCATCTCAAATCTGCCAAACATTTAGAAAACGCTGTGAAAACCTGTGTGCAATGCGGTGAGAAATGTTCAAACACAAAATCCCTGGAATTTCATATGCTTAAGGAGCATACAAACAATTGTGGTTATTGCAGCATGTCGTTTGTGCAATTTAATCTGTTAGAAGAGCACATAAAAAGTGCGCACAACGAtaaCACCGATCGAGACAAAGTCGAGACAAAACCAACCACAGTCGAACCAGTCAAGACAGAAGACCAGAATTGTTTCATTATTGAGGAGTACATTGTTGAGTCGCTTGCTCCAGGATTCGATGCACCAGCGAACTCAGTGCAGGATTTCACCGTAATTGctaaagaaaatcaaatttcacCAGAGTTCGAGAAAGTCAAGAATGTTATAAGCAAAAAGACACCTGACCTAAGAGCTGAGTTGAAGAAGTCTCTAGCGAATTGCTTACAAGACGAAACCCCAAGAAGAGTCATCACCAAGGCCATGAATGATGAGGATGTAGAAATCTCTGAAAAAGTTGGTAAACTGCTGGATATGCTGGTAGATGTAGAGACGCTTGTAAAATTTGGTTGGCCCGAGGATCCTGTCGAAAATGTACTGTGTAAGGTGATCGAAAATTGTGGCTATAATCTGTACAAGACCAAATTCACCGAGGATTATGGTACACGAATGAGAGAGTTTGTAAAACTTCTGTTCACCGTGGTCATTCAAAATGATTCAATCAAGGAGTTgctgaataatttttcaatCGATGAAGTTATCGATTATGTTCTTTCCAATGATGATGATTAA
Protein Sequence: MRRRAYLSTTTRAVHGIFLARMKESSTTSAVLLNTRKSLRSAKEAKKSEPDPNVEIVTPDPTTGLTDHYLLTEIKGDADENEIDFVLTKKRFEEGTQPAECREEIENWEEVGEIDDDDGNVKTKEIVEHVCGKCYKSFRTIKVLKRHMEYCIFNSDMVLRRAEMQNNIEKIEKEAIIMEKKDICFCCGDSYDTCHLGHINCTECPKTFKTQISLERHFFLVHSENNDFPCDVCNGRIRTESLLKLHREQHKKLGKPFACRQCGKDFTRQYHLKRHHKYSLCGNGKAEMMQCKVCGKEFYRLDNLRVHLRSHLGQGTPKKPEYTCPCCKKCFYSLSTLNIHIRTHTGERPFDCDLCEKNFPSLVSLKKHRRYHTGEKPYTCEVCQQTFAVKEVLNRHMKRHTGQKPHVCTQCDKRFIQATQLKNHLRTHLRPYECTICPEKFKTEKQFEKHFRLHTKKTSRTQKKCTDCDLAFRSHPILLRHLKSAKHLENAVKTCVQCGEKCSNTKSLEFHMLKEHTNNCGYCSMSFVQFNLLEEHIKSAHNDNTDRDKVETKPTTVEPVKTEDQNCFIIEEYIVESLAPGFDAPANSVQDFTVIAKENQISPEFEKVKNVISKKTPDLRAELKKSLANCLQDETPRRVITKAMNDEDVEISEKVGKLLDMLVDVETLVKFGWPEDPVENVLCKVIENCGYNLYKTKFTEDYGTRMREFVKLLFTVVIQNDSIKELLNNFSIDEVIDYVLSNDDD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01542382;
90% Identity: -
80% Identity: -