Xsyl013740.1
Basic Information
- Insect
- Xylota sylvarum
- Gene Symbol
- PAXBP1
- Assembly
- GCA_905220385.1
- Location
- LR999958.1:84859866-84880817[-]
Transcription Factor Domain
- TF Family
- GCFC
- Domain
- GCFC domain
- PFAM
- PF07842
- TF Group
- Unclassified Structure
- Description
- This entry describes a domain found in a number of GC-rich sequence DNA-binding factor proteins and homologues [4, 5], as well as in a number of other proteins including Tuftelin-interacting protein 11 [1]. While the function of the domain is unknown, some of the proteins it is found in are reported to be involved in pre-mRNA splicing [1, 2]. This domain is also found in Sip1, a septin interacting protein [3].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 2.1e-29 2.9e-25 90.0 0.3 4 272 620 827 618 829 0.94
Sequence Information
- Coding Sequence
- ATGTCGCTGTTTCGTAagccaaagaaaattattcagcGTCGTGTGTTCTCAACGTTTGAGGACGAAGATAATGATGTTTTCGACAACAGTGTTAACAACGGCAAACCAGAAAAAATGGGTTCGGAAGATACATCAATTACCTTTGGTTATAAGAAACgtgaaaaaaaggataaattttatgaaaagaaagacaaaaacgAGTTAGAATCGAAATACCCAAAATCGAAATCATTGCTAAGTTTTGCGGATGATGATGAAGAAGATGAGGTTTTTCAAGTTCGTAAATCATCTCACAGTAAGAAAGTAATGCGTATGATGGATAAAGAGCGTCGTAAAAAAAAGGCTAAGGAGGTCAAAGACTACGATCAAGATTCAAGCAACCATCCATCACATCAAGACAATGGTTTGAGGAACGCAATTTCACCTGAAGCTTCAACAACCAATAGCATTACTTCTAGCAATAGAGGTGATCAAAAGCTTTCTTTAACCATGTTGTCGCCAgaacaaagtaaaaataaaaaatcagatAATATTCAAACAGAAATTCGCACAGACGACTTTGTGCTTGTTGTAAAAAAGTCAGGACCTGGAATTATTCTTAATGGAAGGGCAGCCCTTTGTGCCGGCAAAGATGATATGTCAGATGAAGACACTGTAAAAATTAGTGATGATGAATCTGATGGTAGACACATGTTCTCGAAACCAGAGCATCTCAAGCAAATGCTTGAAAGTGGTTCGATACCAGATGCTGCTATGATTCATGCAGCCAGAAAACGCAGACAAAAAGCACGTGAGCAAggtgacATTATTCCAATGGATGAACCAAAAGACCcgccaaaaaaaggaaaacgactCAATCGAGATGATGTCGAAGCGGAAAACTCAGATGAGGAGGAACGTGTGGATATGAATGCAATTACTGGAATAAAAGAGCTTGAAGAACGGCGTGAACAATTTTATTCTGTTGAGAATGATTATTCCGATGACGATTCGGATCGTGAGACGAACGAGTGGGAGAATCAACAAATCCGAAAAGGAGTAACAGGGGCACAGCTCGTGACCGCTCAACAGGAATCAGTTCTATCAAGATTTATGATAAAATCCTCGACTAATCAATTAGAGTATGCATCACCACAATCAACTTCAACGCTTTTAGATGAAGCTTATGCAAATAACTCTTTTGCGAAACCACGGCAATTTAcaaattcgaaaaacaaaaaggaaagtaAGGTTTCGGTATTAAGAACACCTCAAGAAATAACAGAATCCATTAAGAcaagatTAGTGAAACTTAAAGAACTAAACGAAAAAcacaaagcagatattgaacgaataacaatcgatgtaaaagttttaaaattagagGAAAAGGACTGCACACAAAAAGCGCCAACTGCCGCTGCAAAATATCGTTTCTATCAAGAAATAAATGGATACGTCAGCAATCTTGTAGAATGTCTAAATGAAAAGGCATTGAAAATAGCTGAACTTGAAAAGCGTAGTTTATCAACTCTATCACGACATCCCGCTTATTTGGTAGAAAGGCGGAGACAGGACGTTCGGGACCAAGTAAAGGAAATGGCAGAGTCATCTAAGTGTTTAGGTTCAGCTGTGAGAAGGGGCACGGAGTATGAAGAAATAATTAAAAGGACTGCCGAGCGGGAATGCAGGAGAACCCGTAGACGTTGCGAAAGGGAAAAAAGTGACATGAGTAGTATCCATTTGGATGGAATGTCTAGTGACGATGAGGTTTCCGATCGTTTTgtagaacagaaaaaaaacagtattgATCAGTTAGAAGTAGAAGTGGATGACTTGTTCGCAGATACGGGCGATGAGTTTTGTAAACCAGAATTAATACTCTCAAAATTCAACGTCTGGAGAAAGACAGATATGGAATCATATAAGGATGCTTTTGTTAGTCTCTGTCTCCCGAAGATATTAGGGCCATTAGTTAGAACAGAAACGCTAGTTTGGAATCCCTTAAACGAAGACTATAAAGATATTGAAAATATGAACTGGTATTCAGCCTGCATGCTGTATGGATGGTCGGAAAATGAAACAGAAGAATCCCTGTCAATAGATCCAGATTTGAAACTTGTGCCAACAATTATCGAAAAGATTCTACTTCCAAAAATCACAGAAACTGTGAGTAACTGCTGGGACCCAATGTCAACAACGCAAAATCTTCGATTAATTGGACTGATAAACCGTATGGGGCGAGAATATCCAATTCGAGAATACTCATcttcacttcaaaatctttttaATGCTATCctttataaaatgaaatcatCACTTGACAACGATATTTTTATACCCATCTTCCCGAAACAGGTTCAAGAGGCTAGAACATCCTTTTTTCAGCGACAGTTTTGCAGTGGATTGAAATTATTCCGGAATTTTCTTAGTTGGCAAGGTATCATTGCTGACAAACCACTTCGGGAACTAGCTATATCTTCTCTTTTAAACCGGTACTTGCTATTAGCCATGCGGGTGTGCTCTACAAATGATGCGCTTAGCAAGGCATACATTGTCGTTAATACTCTACCAACGGCTTGGCTCCAACCGGAATCGGAAACACTTCAGAATTTGGAGCCGCTAATAGTATTTATTAAATCTATATTTGAAAGCTTCGATTCAAAAAATccactacatatGCAATCTTGTGATAAGGCAAAACAAATTCTTCAACGTTTGCATAGTTGGTAG
- Protein Sequence
- MSLFRKPKKIIQRRVFSTFEDEDNDVFDNSVNNGKPEKMGSEDTSITFGYKKREKKDKFYEKKDKNELESKYPKSKSLLSFADDDEEDEVFQVRKSSHSKKVMRMMDKERRKKKAKEVKDYDQDSSNHPSHQDNGLRNAISPEASTTNSITSSNRGDQKLSLTMLSPEQSKNKKSDNIQTEIRTDDFVLVVKKSGPGIILNGRAALCAGKDDMSDEDTVKISDDESDGRHMFSKPEHLKQMLESGSIPDAAMIHAARKRRQKAREQGDIIPMDEPKDPPKKGKRLNRDDVEAENSDEEERVDMNAITGIKELEERREQFYSVENDYSDDDSDRETNEWENQQIRKGVTGAQLVTAQQESVLSRFMIKSSTNQLEYASPQSTSTLLDEAYANNSFAKPRQFTNSKNKKESKVSVLRTPQEITESIKTRLVKLKELNEKHKADIERITIDVKVLKLEEKDCTQKAPTAAAKYRFYQEINGYVSNLVECLNEKALKIAELEKRSLSTLSRHPAYLVERRRQDVRDQVKEMAESSKCLGSAVRRGTEYEEIIKRTAERECRRTRRRCEREKSDMSSIHLDGMSSDDEVSDRFVEQKKNSIDQLEVEVDDLFADTGDEFCKPELILSKFNVWRKTDMESYKDAFVSLCLPKILGPLVRTETLVWNPLNEDYKDIENMNWYSACMLYGWSENETEESLSIDPDLKLVPTIIEKILLPKITETVSNCWDPMSTTQNLRLIGLINRMGREYPIREYSSSLQNLFNAILYKMKSSLDNDIFIPIFPKQVQEARTSFFQRQFCSGLKLFRNFLSWQGIIADKPLRELAISSLLNRYLLLAMRVCSTNDALSKAYIVVNTLPTAWLQPESETLQNLEPLIVFIKSIFESFDSKNPLHMQSCDKAKQILQRLHSW*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00310249; iTF_00240751; iTF_00389619; iTF_01541438; iTF_00313473; iTF_00311814; iTF_00311051; iTF_00315180; iTF_00312608; iTF_00315968; iTF_01300888; iTF_01300030; iTF_01253889; iTF_00724790;
- 90% Identity
- iTF_01541438;
- 80% Identity
- -