Xsyl008158.1
Basic Information
- Insect
- Xylota sylvarum
- Gene Symbol
- Clic
- Assembly
- GCA_905220385.1
- Location
- LR999957.1:128016667-128027103[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 6.3e-13 1.6e-09 37.9 0.0 3 39 173 210 171 214 0.88 2 3 0.53 1.3e+03 -0.3 0.0 28 37 245 254 244 260 0.86 3 3 1.1e-09 2.7e-06 27.6 0.1 6 39 286 319 281 324 0.80
Sequence Information
- Coding Sequence
- ATGAACAGCCATCTGTTAGCATCCCGGGGTATTATCCTAGTGTTTTTTTGTCCTGAGAAAGGTTATATGAAAAAATCGAGATTTTATCATCAAGATAGATGCAAAGGCCCAGAAGCCAAAACTCACTCACCGATAAAGCACGTCTATACCAAGTCCTCAGAGATGTCTGCCGAAATAAATGTTGTCGATGTCTCCGATACAGATTCAGAGTCCGTCCAAGAACCCCCACAACTACCCACTGAATCAAAAGATGACACTGTTTTAAAGAATGATCAGTATATCATATTCGAAGTGAAAACGGACTCAGAACCAATGTTTAACTACATCATCACGGAAGCAAAGAAACCACCACCCGATGACGGGGATCCACCTCAAAGCACCACCTCTAAACCTGTAGAGAAAGAAAATGATCCTGATCTAGAACAAAATACTGTGCCATGTGTCCAAATAATCGTTGAGGGTGATAAGGAAGAGGCTAAGGAAAACTCACCGAAAAGTCGGCGTGCCCTGAGGCGAAAAAAACTTGCCGAAGCCGTAGAAGCCGTAGTCAGTAACCACCTAAGCATAAGTAAAGCAGCCAATGTCTACCAAGTGGTAAAGAGCACCCTCTGGAAGGAAGTGAATAAACACACAAATCGTTGCCGGAAAAAAGTCAATGAAGAATTAAATCGCAAGATCGCTCAACGTATTTGCGCTGGCGAATCGCTCTCAGTTATTTCGAGATCTCTAAAAATAGCCAAATCCACCTTACATCAGCATAAAGTTCGACTGGCACAGAGCGGGCAGCTACCAGCGAATGTAACACTTAAACCACCTGTAAATCTAAAGGAGAGACTCGCCACACAGGAGCGTATCATACAAGCCTATCGCGGTTGCCGGGTGAATGGTATGTCGATACGTTTTGCCGCAAAATTTTACTCCATATCTCCGTCCACATTGTGGAAGTACATACGACGATATCAAGCTGCCCAGAAGAAAGAACAAGGCGAAGCAACGCCTGCAGCCGCTGAGGTTGATTCTGTGAAAGAAGACAGTCCAGACGAGGAATCAGATAGTAGTGATTTAGACATGGCAGACTTCGATGTGGACGCTTACTGTAAAAAAGAGGACGCTAGTAAGCAAACTAGCGAGGATGGTgactttttgattaattttgacTTCGAAACGTTCGAGAAGTATGCATCCACAATCGATGGAAGACGCAAAGGAGCGTGCCTTTTTTGTCAGGAATATTTCATGGACTTGTACCTGTTGGCTGAATTGAAAACAATAAGCTTAAAGGTCACTACAGTTGATATGCAAAAGCCTCCACCAGATTTCCGTACCAACTTTGAGGCAACACATCCGCCAATCCTAATTGACAATGGTCTGGCCATCCTTGAGAATGACAAAATCGAAAGGCATATCATGAAGAACATCCCCGGTGGATATAATCTTTTCGTGCAGGACAAGGAGGTAGCCACACTGATTGAGAATCTATATTCCAAACTCAAGTTGATGTTGGTcaaaaaagatgaaaacaaaaacaacgccTTATTGTCACATTTGAAGAAGATCAACGATCATCTGACATCACGTGCAACACGTTTCCTAACAGGCGACACTATGTGTTGTTTCGACTGTGAACTAATGCCAAGGCTGCAACACATTCGAGTGGCTGGAAAGTATTTTGTTGATTTCGAAATACCcACTCATCTGACAGACTTGTGGCGTTACATGTATCATATGTATCAGTTAGATGCCTTCACGCAATCCTGCCCGGCCGATCAGGATATTATCAATCATTATAAATTGCAACAGATGCTCAAAATGAAGAAACACGAAGAACTGGAGACACCAACATTCACAACGTCAATTCCGATTGATATTTCGGAATAA
- Protein Sequence
- MNSHLLASRGIILVFFCPEKGYMKKSRFYHQDRCKGPEAKTHSPIKHVYTKSSEMSAEINVVDVSDTDSESVQEPPQLPTESKDDTVLKNDQYIIFEVKTDSEPMFNYIITEAKKPPPDDGDPPQSTTSKPVEKENDPDLEQNTVPCVQIIVEGDKEEAKENSPKSRRALRRKKLAEAVEAVVSNHLSISKAANVYQVVKSTLWKEVNKHTNRCRKKVNEELNRKIAQRICAGESLSVISRSLKIAKSTLHQHKVRLAQSGQLPANVTLKPPVNLKERLATQERIIQAYRGCRVNGMSIRFAAKFYSISPSTLWKYIRRYQAAQKKEQGEATPAAAEVDSVKEDSPDEESDSSDLDMADFDVDAYCKKEDASKQTSEDGDFLINFDFETFEKYASTIDGRRKGACLFCQEYFMDLYLLAELKTISLKVTTVDMQKPPPDFRTNFEATHPPILIDNGLAILENDKIERHIMKNIPGGYNLFVQDKEVATLIENLYSKLKLMLVKKDENKNNALLSHLKKINDHLTSRATRFLTGDTMCCFDCELMPRLQHIRVAGKYFVDFEIPTHLTDLWRYMYHMYQLDAFTQSCPADQDIINHYKLQQMLKMKKHEELETPTFTTSIPIDISE*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01541361;
- 90% Identity
- -
- 80% Identity
- -