Xseg005492.1
Basic Information
- Insect
- Xylota segnis
- Gene Symbol
- Clic
- Assembly
- GCA_963583995.1
- Location
- OY757237.1:16040185-16055424[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 2.5e-13 4.5e-10 39.1 0.1 3 41 211 250 209 254 0.88 2 3 0.52 9.3e+02 -0.3 0.0 28 37 283 292 282 298 0.86 3 3 2.4e-09 4.2e-06 26.4 0.1 10 39 325 357 320 362 0.81
Sequence Information
- Coding Sequence
- ATGCTGGTGCTCTGTTGGTGGTTATCGATATATGTAGAACTGATGGCATATATTATGCGCTTTTATGGTGTTAGACGTGGTTACACTGGAATTGATGTCACAGCGACTGTAATATCTTTTTGTACATGGCGGTCCCCAGATCATCAGTGCGTCAACAAAATTGATTATGTTGCGGTCGAGGCAAGGCAGTCTTCCAGCGTACTGGATGTCCGAACATTCCCAACTGTCAATAAAGATTCGGAGCACTACCTAGATGTAAccaagGAAGAAATAAATGTTGTCGATGTCTCCGATACAGATTCAGAATTCGCCCGAGAATGCCCACAAAAACTACCCACTGAATCAAAAGATGATACTGCTTTAAGGAATGATGAGTATATCATATTCGAAGTGAAAACCGATGGAGAACCAATGTTTAACTACATCATCGCTCCAGCAAACAATCAACCACCCGATGATGGGGATCCCCCTCAAAGCATTGTCGACTCTCCTCATCCTGTAGAGACAGAAAATAATCTGCAAGAACATCAAAATACTGTGCCATATGTTATAAATATACAGATACCCGTTGAGGGTGATAAGGAAGAGGCCAAAGAAAACTCACCCAAAAGTCGGCGTGCCTTGAAGCGAAAAAGACTTGCCGAAGCCGTAGAAGCTGTAGTCAGTAATCAGCTAAGCATAACTAAAGCGGCCAACGTCTATCAAGTGGTAAAGAGCACCCTCTGGAAGGAAGTGAATAAACACACAAATCATTGCCGAAGAAAAGTCAATGAAGAACTAAATCGTAAGATCGCCGATCGCATTTGTGCTGGCGAATCGCTCTCAGGTATTTCGAGATCTCTAAAAATAGCCAAATCCACATTGCATCAGCATAAAGTTCGGCTTGCACAGAGTGGGCAACTACCATCGAATGTAACATTGAAACCACCTGTAAATCCAACGGAGCGACTCGCCATGCAGGAGCGTATTATACAAGCTTATCGCGGCTGCCGGGTGAATGGTATGTCAATCCGTTTTGCCGCAAAATTTTATTCCGTATCTCCGTCGACATTATGGAAGCACATACGACGCTATAAAGCCGCTCAGAAAAGACAACATTGCGAAACAACGCTTGAAGCTCTGGAGGTGGAATCTGTGAAAAAAGATAGCTCAGATGAGGAGTCTGATGGTAGCGACCTAGACATGGCAGACTTTCAAGTGGACGCCTATTGTGAAAAGGACCACAACACTGGTGACGAAGCCAGCGAGGATGGtgatttttttattagttttgattTTGATACCTTCGAGGAGTATGCATCCACAATCGATGGAAGACGTAAGGGAGCGTGTCTTTTTTGCCAGGAATATTTCATGGACTTGTACCTATTGGctgaattaaaaacaataagCTTAAAGGTCACTACAGTTGATATGCAGAAACCACCACCAGATTTCCGTACCAACTTTGAGGCAACACATCCGCCAATCTTAATTGACAATGGTCTGGCCATCCTTGAAAATGACAAAATCGAAAGGCACATCATGAAGAACATCCCCGGTGGATATAATCTTTTCGTGCAGGACAAAGAGGTTGCCACATTGATTGAGAATCTATATTCCAAACTCAAGTTGATGTTGGTcaaaaaagatgaaaacaaaaacaacgccTTATTGTCACATTTGAAGAAGATCAACGATCATCTGACATCACGTGCAACACGTTTCCTAACAGGCGACACTATGTGTTGTTTCGATTGTGAACTTATGCCAAGGCTGCAACACATTCGAGtggctggaaagtattttgttgATTTCGAAATACCCACTCATCTGACAGACTTGTGGCGTTACATGTATCATATGTATCAGTTAGATGCCTTCACGCAATCCTGCCCGGCCGATCAGGATATTATCAATCATTATAAATTGCAACAGATGCTCAAAATGAAGAAACACGAAGAACTAGAGACACCAACATTCACAACGTCAATTCCGATTGATATTTCGGAGTAA
- Protein Sequence
- MLVLCWWLSIYVELMAYIMRFYGVRRGYTGIDVTATVISFCTWRSPDHQCVNKIDYVAVEARQSSSVLDVRTFPTVNKDSEHYLDVTKEEINVVDVSDTDSEFARECPQKLPTESKDDTALRNDEYIIFEVKTDGEPMFNYIIAPANNQPPDDGDPPQSIVDSPHPVETENNLQEHQNTVPYVINIQIPVEGDKEEAKENSPKSRRALKRKRLAEAVEAVVSNQLSITKAANVYQVVKSTLWKEVNKHTNHCRRKVNEELNRKIADRICAGESLSGISRSLKIAKSTLHQHKVRLAQSGQLPSNVTLKPPVNPTERLAMQERIIQAYRGCRVNGMSIRFAAKFYSVSPSTLWKHIRRYKAAQKRQHCETTLEALEVESVKKDSSDEESDGSDLDMADFQVDAYCEKDHNTGDEASEDGDFFISFDFDTFEEYASTIDGRRKGACLFCQEYFMDLYLLAELKTISLKVTTVDMQKPPPDFRTNFEATHPPILIDNGLAILENDKIERHIMKNIPGGYNLFVQDKEVATLIENLYSKLKLMLVKKDENKNNALLSHLKKINDHLTSRATRFLTGDTMCCFDCELMPRLQHIRVAGKYFVDFEIPTHLTDLWRYMYHMYQLDAFTQSCPADQDIINHYKLQQMLKMKKHEELETPTFTTSIPIDISE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01542130;
- 90% Identity
- -
- 80% Identity
- -