Basic Information

Gene Symbol
ct
Assembly
GCA_905220385.1
Location
LR999957.1:86229931-86270252[+]

Transcription Factor Domain

TF Family
CUT
Domain
Homeobox|CUT
PFAM
PF02376
TF Group
Helix-turn-helix
Description
The CUT domain is a DNA-binding motif which can bind independently or in cooperation with the homeodomain, often found downstream of the CUT domain. Multiple copies of the CUT domain can exist in one protein (eg Swiss:P10180).
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 3 1.3e-26 1.8e-22 79.7 0.0 3 71 773 842 771 848 0.94
2 3 5.1e-32 7.1e-28 97.0 0.0 3 77 1201 1276 1199 1278 0.96
3 3 6.9e-31 9.4e-27 93.4 0.0 3 77 1420 1495 1418 1497 0.96

Sequence Information

Coding Sequence
ATGGATGGATTGGAAGCGAGTTCACCTTTAAGAGTGGAGGAAAATCACTGCAGGGCTACTTTGGCCGAAAAGGAAGTTAACACATTGAAGGAGCAATTATCAACTGTTTCTAccgcagcaacaacaacatcaacgtCTTCGACAACAACCACCACAGCATCTTCGATACATTCGTCGCCACCATCTCCGTCATCGGTGGGCGGTACAACGCCGACATCAACACCCATACCAAATATTAAGTTGTCACCAACGATAAATAACAACAGTAGTttcaacaataataacaataaattaaacaGTGTTGCCATATCACAGCATTTGCATCAGAACGGAAATTTGCTGGCGGCAACACCGTCTCCGTCTCCACCATTATCCGAGAACGGTAGCACACTCAACGGTTGCCTTAATTCGGCGAAGTTGCTTTTCAATCATAATCAAATAATGGACACAAATGCATCGACCACTGCGACCGATGTAAATGCAGCTGCGTTGGTAACGACGACAACCACCACGCACGGCTTAGTTTCAACGGATGCTAGTAAACTCATTACGGCAATGACCGCCGAAATGAATCTCCATCAAGACTCCAGTGAATCGGCAACCCTGGCGAGCAATcaaatgtcaaatcgatcccaTAGCCCCCTTCTCTCAATGGAGGGCAGTGGAAATGAGGCAACacgaaacaataataacaataatagtacTAGTAACAATAATAAGAATACAAATAGTAATAGCAGTAGTAGTTGTAATAATAATTTAGCTGATGAATTGGCTGCCAAAGAGAAAGAGattAAAGCACTTATCGACGAGGTTAACCGACTGCAAGCCCTCCAAGAAACCCACATTGTACAAATACAAAGACTTGAAGATAATCTAGAGGCGAAAAGTCAGCACATTCACAGACTAGAGTCTCGTCTAGAGAAACAGCCCTTCAAGAGTGATAACTCTGTGGCGGCCAAGCCAAGTTCCGATCTGTACCACGATGATGAGGAAACGCCGGTAACTCCGCCCGTTCCAGAACAGACGCCAACAGCTGTGGTCGAGGAGATTCATATAAAAAAGGAGAATCAAACAACACCAACACCTACACCGCTTGGACTGGACATCAGAAGTCAGTCGGTGGCAGCAGCCGCTGCTGCCGCTGCCGTAGCTGCAAATGACCCCAAGCAGTTCCAGGAACTTTTACTCGAAAGAACCAAGGCACTGGCGGCCGCTGCTCATGCCTCCACTGAGGCACTGAAATCCGAAGGAATTTCCAGTGACACGGCCTCAGCAGACAACTCCAAGACTTCGGACAATGAGTCTGCAGCATGTGTGGTCATTAATAGTGACCCGAACGATTCGAGTCTGCAGCAGCAGCAAGTGCAGCACGAACAACTGCGACCTCCTCCATCCGAGTCGGCTGCATCTTCTACGTCCGTAGAGCAGATTCCATCGTCGAATTTCCAAAGTGTCGATCAGTTTGGTTCGCTGCTTGGCGGTGAGTTGGTCAATTCGTATTGGCGTCGTGGTTTCGATCACTTGCCATTGGCCCCACCACCTCCGCTGCCACCCACGCAACAGGCATCACCAGCAACAGCCGCCGTTTCGATAGCACACCAACCACCATCAATAGCAACCACAAATCCAAGCTCTAAAACGCCAacatcaatttttcaaaatttcccaTCAATTCTTTCGTGCCGATCGCCTCCACCACTCTCAATGTCGGCTACGGGACCATCAACCACCACTCTCTTGAGTCAGCTAGTCAATTCAACCTTCTCATCCAATTCAACTCCTTCTCTTCGAACAGATACGCattcatcgttgtcgtcgtcctcGTTGTCGACCTCAACTACGGCCGCCCACCTGCAACAGTCTTcgcaccatcaccaccatcatcatcatcagcagcagcaacagcagcagcagcagcatcatcctGCCCTACAACAGCATCATCAGCAACACCAACAGCATCAGGACTACGAGAAGGCCAATAGCCATCACGATTCCTCGTCAACGGCGAGTACGCCTAATCTGCAGGACCAGCGATCCAATGACGAGCACATGAACGGCGCAAAGTCCGCCAAGGGCCAGGAGGACAACAACAACTCGTTGGGATCGTTGGCCCATCTACCACCAGCATTCCTGCCAGGCTTGCCATTTCAATTCCAAGATCGTGGTCATTTccgtttcgccgatgatatccAACTACCACCGGGCGCCTCAATGGCCGGCCGTCTCGGAGAATCGCTCATACCCAAGGGCGATCCCATGGAGGCTAAGCTCCAGGAAATGCTACGCTACAACATGGACAAGTATGCCAATCAAAGTCTGGACACACTACACATATCACGACGCGTACGCGAACTTCTCTCCGTGCACAACATCGGACAGAGGCTCTTCGCCAAATATATCCTTGGACTGTCGCAGGGTACCGTATCCGAGCTGCTGTCCAAGCCAAAGCCCTGGGATAAATTGACTGAGAAAGGCCGTGACAGTTACCGCAAAATGCACGCCTGGGGATGTGATGATAACGCTGTGATGTTACTGAAGTCTCTGATACCCAAAAAAGATTCGGGTATGCCCCAATATGGTCGCAACGAGGACTCTATGTCGGACGATCGCATTGCACACATCTTGAATGAAGCTTCCAGCCTTATGAAGACCCCACAGGGACCAGGTCCACAGTTGCAGCAACAAATGCAGCACGAAGCTCAACGCCACCAACACCAGCAGCAACAATCGTCTTCACTTGAGGACTCGCACAGCAACGAGGATTCCAAGTCGCCGCACAACTCATGCacttcaccattctacaaggaGTCACCggtgcagcagcaacagcaacaacagcagcaacaacagcagcagcgtcATGAGGCGCAACGTCGAAGCGTGAAGCCCGACGAAATGTCACAGGATAAGATGGCGCGAATATACCAGGAAGAGCTTGCAAAACTAATGACCCGCACACCACGCGACACGTTTCCAAGTTTTCTGTTTCCACATTTTTTCAGTGCGGCTGGTGGCCTTCCACCCGCCAATAGCGCAATGCCGCCCGACGACAACATTCGCATGGCATTGGAGGCCTACCAACGAGAGATGGCCAAGTTGCAGCAGAACAGCAGCGGCAATATACCCAACTTTCCGAATTTCTCAAGCTTGATGGCGTTGCAGCAACAAGTGCTGAACGGCGCCCAGGATCTATCCGTCCCGAAGGAACACGAAATGAAGGTGAACGGCCAACGCAATTCCATGGAGAGCTGCGACTCAAATCAAACCAAAGAAGCCAACGACGAGGCGGCGGGGTTGCGTCACTCAAGTGCATTTAGCTTAGTCCGTAATAAACCAGAATCCACGCCGGTTCCGAGCTCCAACTccaacacaaacacaaactcCGCTGCCCCCAGCCCTCTCAGCAATTCCATTCTACCGCCAGCTATGACGCCCACGGAAGACTTCTCTACAGCTGCCAGTCCCCTGCAGCGAATGGCATCGATCACCAACTCGTTAATTACGCAACCGCCAGTAACGCCACACCACACGCAGCCGCAAAGGCCCACTAAGGCCGTGCTGCCTCCCATTACTCAGCAGCAGTTCGACATGTTTAACAATCTAAACACCGAAGATATTGTTCGCCGAGTAAAGGAAGCTTTGTCGCAGTATTCCATCAGTCAGAGACTGTTCGGAGAGTCTGTACTGGGCCTGTCGCAGGGATCTGTGTCAGACCTTCTAGCCAGACCCAAACCCTGGCACATGCTTACGCAAAAGGGTCGCGAGCCATTCATTCGCATGAAGATGTTTTTGGAGGACGAGAACGCCGTGCACAAGCTGGTGGCGAGCCAGTACAAGATTGCCCCCGAAAAACTTATGCGCACCGGCAGTTACAGTGGTAGTCCACAAATACCCCAAGGCCTTGCCAATAAAATGAACAGCATTCCAATGCAAAAGATGATGAACGAACTGAAGATGCAAGAACCACAAGCGCAGCACATTATGCAGCAAATGCAGGCTGCTTCCGCAATGGcagccgctgctgctgctggtcaCATGCAAAACGCCCAGCACCAGGGAATGCTTCTTACTACCCCAGGACTACCACCACAGCATGCGATAAGTCTGCAACAGGCCGCTGCGGCCGCCGCTGCCGCTAACGAGAAAAAGCCAATGATGATGCCAATCCACTCACCACACCAAGCCAACGCCATGCGAAGCAGCATGCACCAGCACATGTCTCCGACAGTGTACGAGATGGCCGCACTTACACAAGACCTCGATACGCAGGTCATCACCACAAAAATAAAGGAAGCCCTTCTGGCGAACAACATCGGGCAAAAGATCTTTGGCGAAGCGGTCCTAGGCTTGTCACAAGGCTCCGTCTCGGAGTTGCTTTCAAAACCCAAACCCTGGCATATGCTCAGTATAAAGGGCCGAGAGCCTTTCATTCGGATGCAGTTGTGGCTTTCTGATGCAAACAATGTTGAGCGCTTGCAGGTACTTAAGAATGAGCGTCGAGAGGCTAGCAAACGCCGTCGGTCCACAGGCCCCAATCAACAGGACAACAGCTCCGACACCAGCAGCAATGATACAGCTGACTTCTACACCAGCAGTCCCGGACCAGGATCCGTTGGTTCCGTAGGTGCGCCGCCAAACAAAAAGCAGCGTGTACTCTTTTCCGAGGAACAAAAAGAAGCTCTTCGTTTGGCCTTCGCTCTCGACCCATATCCAAATGTGGGTACCATTGAATTTCTCGCTAACGAACTGGGCCTGGCAACGCGCACCATCACCAACTGGTTCCATAATCACCGAATGCGCCTAAAGCAACAGGTGCCACACGGACAGCCCACAGAGCCGGTTCCCAGTCGAGAAAACACCAACGCAACACCCTTCGATCCCGTCCAGTTCCGTATACTCCTTAATCAAAGACTGATGGAATTGCAGAAGGAGCGCATGGGTCTCAGTGGCGCACCAATTCCCTACCCACCGTACTTTGCCGCCAACCCCAATCTGGCGGCACTCATCGGTCGCGGTCTTCTCCCCGGTGGAGGCGAACCTGATCTGCAAGCCCTCAACAATGCCTTCAAGGAACAAATGAGTGGCCTGGATCTTTCCCTAAAGCGGGAACGTGATGACGACTTTGAAGACGACGGCGAGGGTGACAGCCACTTGTCTGACAATGAGTCGATCAATGGTAGCGATGAAAAGTCCGAACTGAGTGAAACCCCTCGATCGTCTCTTTCCGGAGCGGGCATGCAATCGAGGACATCTCGCCGCAAACCTGCAGCACCACAATGGGTTAACCCCGATTGGCAGGGAGACGGAAAATCCGGACTAATGCCACCAATGCCCACCGCTGCCACCGACAAGGAAGTCATCATCAATGGTGTTTGTGTCATGCAGCAACAAGCGGCCGACTACAGTCGAAAGTCAGCCACTGCAGATGAAGACGACGAAGGCACATCCGATGCCAATGACGAGGAATCATCAGCCCATCATCGTACACAATCCTCCGATTGCGAAGACGCTCCCCCGGACATCGATCAAAGATTCATGGAACCCGAGGTTCGAATCAAACAAGAAGAAGACTGTGACAGCAACGATAGCCATCAAGACGATCACGATTCTGATCTAAGAAAGTCCTCACACCACCGGGACGACGAGGACGACACTCCCGGTGCATGGAACTACTAA
Protein Sequence
MDGLEASSPLRVEENHCRATLAEKEVNTLKEQLSTVSTAATTTSTSSTTTTTASSIHSSPPSPSSVGGTTPTSTPIPNIKLSPTINNNSSFNNNNNKLNSVAISQHLHQNGNLLAATPSPSPPLSENGSTLNGCLNSAKLLFNHNQIMDTNASTTATDVNAAALVTTTTTTHGLVSTDASKLITAMTAEMNLHQDSSESATLASNQMSNRSHSPLLSMEGSGNEATRNNNNNNSTSNNNKNTNSNSSSSCNNNLADELAAKEKEIKALIDEVNRLQALQETHIVQIQRLEDNLEAKSQHIHRLESRLEKQPFKSDNSVAAKPSSDLYHDDEETPVTPPVPEQTPTAVVEEIHIKKENQTTPTPTPLGLDIRSQSVAAAAAAAAVAANDPKQFQELLLERTKALAAAAHASTEALKSEGISSDTASADNSKTSDNESAACVVINSDPNDSSLQQQQVQHEQLRPPPSESAASSTSVEQIPSSNFQSVDQFGSLLGGELVNSYWRRGFDHLPLAPPPPLPPTQQASPATAAVSIAHQPPSIATTNPSSKTPTSIFQNFPSILSCRSPPPLSMSATGPSTTTLLSQLVNSTFSSNSTPSLRTDTHSSLSSSSLSTSTTAAHLQQSSHHHHHHHHQQQQQQQQQHHPALQQHHQQHQQHQDYEKANSHHDSSSTASTPNLQDQRSNDEHMNGAKSAKGQEDNNNSLGSLAHLPPAFLPGLPFQFQDRGHFRFADDIQLPPGASMAGRLGESLIPKGDPMEAKLQEMLRYNMDKYANQSLDTLHISRRVRELLSVHNIGQRLFAKYILGLSQGTVSELLSKPKPWDKLTEKGRDSYRKMHAWGCDDNAVMLLKSLIPKKDSGMPQYGRNEDSMSDDRIAHILNEASSLMKTPQGPGPQLQQQMQHEAQRHQHQQQQSSSLEDSHSNEDSKSPHNSCTSPFYKESPVQQQQQQQQQQQQQRHEAQRRSVKPDEMSQDKMARIYQEELAKLMTRTPRDTFPSFLFPHFFSAAGGLPPANSAMPPDDNIRMALEAYQREMAKLQQNSSGNIPNFPNFSSLMALQQQVLNGAQDLSVPKEHEMKVNGQRNSMESCDSNQTKEANDEAAGLRHSSAFSLVRNKPESTPVPSSNSNTNTNSAAPSPLSNSILPPAMTPTEDFSTAASPLQRMASITNSLITQPPVTPHHTQPQRPTKAVLPPITQQQFDMFNNLNTEDIVRRVKEALSQYSISQRLFGESVLGLSQGSVSDLLARPKPWHMLTQKGREPFIRMKMFLEDENAVHKLVASQYKIAPEKLMRTGSYSGSPQIPQGLANKMNSIPMQKMMNELKMQEPQAQHIMQQMQAASAMAAAAAAGHMQNAQHQGMLLTTPGLPPQHAISLQQAAAAAAAANEKKPMMMPIHSPHQANAMRSSMHQHMSPTVYEMAALTQDLDTQVITTKIKEALLANNIGQKIFGEAVLGLSQGSVSELLSKPKPWHMLSIKGREPFIRMQLWLSDANNVERLQVLKNERREASKRRRSTGPNQQDNSSDTSSNDTADFYTSSPGPGSVGSVGAPPNKKQRVLFSEEQKEALRLAFALDPYPNVGTIEFLANELGLATRTITNWFHNHRMRLKQQVPHGQPTEPVPSRENTNATPFDPVQFRILLNQRLMELQKERMGLSGAPIPYPPYFAANPNLAALIGRGLLPGGGEPDLQALNNAFKEQMSGLDLSLKRERDDDFEDDGEGDSHLSDNESINGSDEKSELSETPRSSLSGAGMQSRTSRRKPAAPQWVNPDWQGDGKSGLMPPMPTAATDKEVIINGVCVMQQQAADYSRKSATADEDDEGTSDANDEESSAHHRTQSSDCEDAPPDIDQRFMEPEVRIKQEEDCDSNDSHQDDHDSDLRKSSHHRDDEDDTPGAWNY*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2