Xseg006327.1
Basic Information
- Insect
- Xylota segnis
- Gene Symbol
- hang
- Assembly
- GCA_963583995.1
- Location
- OY757237.1:38622742-38631385[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.04 3.1 8.5 1.3 3 23 252 273 251 273 0.93 2 17 0.016 1.2 9.7 2.7 1 23 440 463 440 463 0.91 3 17 0.0015 0.11 13.0 1.7 2 23 570 592 569 592 0.95 4 17 0.0031 0.23 12.0 0.2 1 23 600 623 600 623 0.95 5 17 0.00016 0.012 16.0 1.2 2 23 721 742 720 742 0.97 6 17 1.9e-05 0.0015 18.9 2.5 2 23 786 808 785 808 0.96 7 17 0.0042 0.32 11.6 0.3 2 23 817 839 816 839 0.95 8 17 0.00034 0.026 15.0 0.2 1 23 852 875 852 875 0.98 9 17 0.00031 0.024 15.1 1.0 1 23 903 925 903 925 0.99 10 17 0.0013 0.1 13.1 0.9 1 23 933 956 933 956 0.96 11 17 0.013 0.96 10.0 0.3 2 21 964 983 963 984 0.92 12 17 0.00019 0.014 15.8 0.4 3 23 1036 1056 1035 1056 0.98 13 17 6e-05 0.0045 17.4 0.2 1 23 1091 1113 1091 1113 0.98 14 17 6.3e-05 0.0047 17.3 0.2 2 23 1138 1160 1137 1160 0.93 15 17 0.62 47 4.7 0.2 2 19 1180 1197 1179 1199 0.89 16 17 0.0046 0.35 11.4 0.6 3 23 1215 1235 1215 1235 0.98 17 17 0.0037 0.28 11.7 0.1 1 23 1368 1390 1368 1390 0.97
Sequence Information
- Coding Sequence
- ATGACAGAAGAATCAATATTACGTGCACGTCAGAATTGCTGTCGCTTGTGCCTGGCTCCGGACAGTGAATGTATTTCGATTTTTAACAGCTATGCGGCTGATAAGGAGCCCCTAGCTACCAAAATCCAATCTTGTGTCAACATTAAGGTATCGCCTATTGATCGACTATCGCTGCGAATATGCCATGGTTGCATCAGTTACTTGAACTCATGGCAGAGTTTCAAGAATCGTTGTGTTGCCTCACAGAACAAACAACGCAGCTGGTTGGAGATatccaaaaaaatagaaaagaaacaaattggTTCAGCAATTCCACTCTCTGTTGGATCAGGAGGAATAGGAGGTGGGGGTGGATCCCATGAAGATGGAGGCGATGAACAAGAAAACAGTCAACTTGCCACATCGATTTTGGAAGGAATTTCATCGCTTAAAAAGCGACGGTCTTTAACGGTTTACccTATTCCTGTGCATATTAAAGATGAGCCAATGGATGATGAGGAATATGATCCAAAACACGATGAATCAGACATAGATCCAACACTTTTCTTGGAACGCACCGAAGAGGAAGGATCTGATAATTTGTCACAGAAAGAACAACATTTGGCCTCGCTTGGCTTGAAACAAGCAACCGGTGCAGTACACTCTTTGAACTACTTGacCGACTACAGTTTCGATGGTGAGAAGAATATCCAATCAACACCAGATAAATCCTTGGAAATCACCCCAGCAAGCAATGAAGTAAAAGAAGCATCATGTCGTGCTTGTAATTTGAAATTCTCCACAAGAGCAAATGCCCGTCGCCACGAGCGTAATCTTCATCCACATCTATTTACAAATATTTCACTAACTACAGCACCAGTTAAGGGACTCAGTGTAGTACAGCACGGTCCTAAAGGGAGTCAGACAGTGATGCGACCAATCAAACCAGATCAACTTGGTCTCTTTGACTATGACCAACCGGAAAAGTACCAACAACTGTTAACCGAAGAAAAAGTAACATTCATGCAACGCCACGATGATTTTCTGCAGCAATATCAAAATATGACATGCAATTGCTGCCTACGCACCCATGCCACGTACAAGAATTTTATGGCTCACATGCGCAAGAAGTATCACTCGTTGCCGCGCAATCTTTGCTTCAAGTGTCTAAAACAAAACGATTCAAAGGCACTATTTATATCGCATctgaaaaaacgaaattgtaTTAACCTGTACAAGATTTACCACAGCTTGATTGATGCAGGCGTTCTGAAGAAGGACTCAACCAGCTGTTCGCCCGATAAGCTGCGTGCCAAAGAACTGCTAGtgaataaaatttatgaatGCAAGATATGCTCAAAACATTTCCGATTGAAGTTGGAGTTTCGCAGTCACGTTTATGAGGAACATGCCGATTATCAAAAGAAGGATGTTTCGCCGGGTCACTGTGGTTTCTGTGGCTTGGAAATTGAAGATCCTTTCGAGCGAAAGCGTCACTACAACAACATGGACTGTATTGTTATATTGCGTTGTATCACATGTGAAGAAAAATTCGATAATCACCAGAAATTCCTGGATCATGTGTATTCCAAACATTTGGCAAATAACAACGAGGCTCAGAAGAGCAATTTGATGAAGGAGCTCTCCTCAACAACCTCTACAGAGAGTTCACcttcgaagaaatctgaaacgCCCTCAAAACCGCAGTTCTTTTCTCGTCTACCTCAGAGTTGTAATATTTGCGGTCAGCATTACAATAACTACAATAATGTTTTGCGCCATATGGAGTCTAAGCATCCAGATCAACTGCCACAGACGTACAAATGCACTAGATGCACAGTGGGTTATCCCCGTTTGATGAACCTCCGTGAACACATGATTGAGGTCCATGGCATGAAGGTGGACAAAGTGCGTAACAATAGCTTTGATTACATTGTGGACTCACCAACCGTACAAGGTACTGTACCGCGAGTAGGTGACAAACTATCGGCTGATGGATACACCGGACGTTACGATTACGTGATGAAAGACTTGATGTCCATAACAAATGGTGGGTCGGGTGCCAACGAAGGTGTGGCTaacgacaacgaagacgacgaaAATCAGTCGGATTCGCCAATTCCAAAGAAAATTAAGCTCGATGGCGGAGCAATGTTGGCAGTTGGCACAGCGAGTCTTAAGGAATGCCACCTCTGCAGTGCAGTTTTTAATAACAATATTGGGCTCTCCAATCATATGCGTACACATACCACTGGTGAAGGTGGTGTAGAAGAGGAAATACCCGAAGAAGAGGACGATACTCCCGATAAGAAACCTATTGATCCGCTTTTCAAGAGAAGTTTAGAGCTTGCAGCAGATCGACGGTTCCGCCGTATGCGATGTCGAATTTGCCAGAAACGCTTCTCCTCCAAGAAGAGTTATCGTCGCCACATGTTGATCGACCATCAAATCCGTAATGTGCAGTTCATCAAGTGCAAACTTTGCAACGCTGAATTCGCCTACGAGAAGGGCCTAAAAGTACACATGTTCAAGATACACAACACGCTTTTGAAGGATGAAATGATTGTCAAGCAGTATGAGTGCGACATTTGTTCGATCGTATACCGCACCGAAGAACAGTTGCTGCTGCATAAGAAGACAGTTCATGGAAATGAGAGTGCCCAAGCCGACGATGAACTTCCGCAATCCATGGATCAAAGTATGGAATCATCTGCACCGCTGTTTTGGTATCAATGTCGGTATTGCCCGTCTAACTTCAACACAAACAAGAAGCTAGCGATTCACATAAATTCTCACTACGAGTTCGATTCAAATGACTATTCCTGCAAGGACTGTGGCAACGTCTACAGTGGACGCAAGAGTCTGTGGGTGCATCGCTACAAAAAACATCCTCCGATAGCTGACCCCTCGGAGTGTTCGCTCTGCAAGAAGATTTTCTTCGACAAACAAATGCTGGAGAATCATGCACAGTCCTGTGTCAAGAAATCATCGACGGTTGGAGCTGGGGCGGCATCTGAAACAGAAGTCTCTACTTTCTTTCAGCATAAAACTGGAGACGATGACGATATCAATGATCAGCAGCAAGAGACTGCTGCAAACTTAATGATTAAACTACCCGAGGTGGCATGTACCATTTGTGCTCAGAAATTTACCGATCAGGAACTATTTACCAAACACATTATGATGCACGAAAGGGAATTGTATACCGACAATCCGCTAGCAGCTATGTTCGATACAGGGCCGGCAGATCCCAACCAATTTTACTTAGACCGCGTCAATGATAATGGGGAGTATGTGTGCGACATTTGCACTAAGGCGTTTGCCCAAATGACTGCGCTGAAGGTCCACCGCAAGTGGCATTTTCGAGGTGATAGCAAACAGACGCCAGTCGATGTAAACGCGCCAAAGACGATGAAACGCAAGCGTGAACTTAAATGCGATTACTGTCCGTCAACGTTCATTAGCTCTAACAACCTCCGGCGTCATATAGCCGAACTGCACAAATCTGAAATATCCAATTGGCCTGAACCACCAAAAATAGAACCCGAAAAGTACCTCCAATGTAGCAAGTGTGACCTGAAGTTCGACGCAAAAAAAGACTGGATCGAACACAAAGTGAACGAAGCGAAGATTGCCAAACCGTTTGGTCCATTCCAGTGGGGCTGTGAAATTTGTGGCATGTATCTGTCACGACGTGAAAAGCTCATACATCACATGCTGGCGCACATCAAAGAAACCAACGGTCAGTTAAGTGTGGAGGGTGAAAACTATCCAGGAGAGAGTAACTCACAGGACTCTGAGACGTCGAGTCATCAGGAAGCTATCGAGCAGCAGAGAATCAATGAAGATGGCaatgaagaggaggaggaggaggaggaggaattCGATGCCGAcgaagaagaagcagaagaaacaGTGGACACTGTAAACCATGATGATAACGCTAATGATGGACAAAATGAGGAtgaaacagaacagcaatcACAATTAAGACAACGACTGGAGCATGAATCAAACGATGACAGCAATGACTCAAGTGACCTGAGTTCCGATTCTGATGATACCTCATCTGATGAAGAAGAACCAGAGGCTCCGTTACCAGATGAAGAGCTCAAGAAACGATATGCGTGCGATTTGTGTCAAGTTTACTTTGGTACATCGGCCGAACTTCAAAAGCATGTCACTAGTCATTTTCTCAACGGACCCGGCTCAGTTACACTGACGACTATCACCAAGGACAAGCCTAAGCCATCAGAGATCCACGCGCtagatgatgacgacgacgacgacgacgacgatgatgacttGACCGAAACAGGCGCAGTCGACTCTTAA
- Protein Sequence
- MTEESILRARQNCCRLCLAPDSECISIFNSYAADKEPLATKIQSCVNIKVSPIDRLSLRICHGCISYLNSWQSFKNRCVASQNKQRSWLEISKKIEKKQIGSAIPLSVGSGGIGGGGGSHEDGGDEQENSQLATSILEGISSLKKRRSLTVYPIPVHIKDEPMDDEEYDPKHDESDIDPTLFLERTEEEGSDNLSQKEQHLASLGLKQATGAVHSLNYLTDYSFDGEKNIQSTPDKSLEITPASNEVKEASCRACNLKFSTRANARRHERNLHPHLFTNISLTTAPVKGLSVVQHGPKGSQTVMRPIKPDQLGLFDYDQPEKYQQLLTEEKVTFMQRHDDFLQQYQNMTCNCCLRTHATYKNFMAHMRKKYHSLPRNLCFKCLKQNDSKALFISHLKKRNCINLYKIYHSLIDAGVLKKDSTSCSPDKLRAKELLVNKIYECKICSKHFRLKLEFRSHVYEEHADYQKKDVSPGHCGFCGLEIEDPFERKRHYNNMDCIVILRCITCEEKFDNHQKFLDHVYSKHLANNNEAQKSNLMKELSSTTSTESSPSKKSETPSKPQFFSRLPQSCNICGQHYNNYNNVLRHMESKHPDQLPQTYKCTRCTVGYPRLMNLREHMIEVHGMKVDKVRNNSFDYIVDSPTVQGTVPRVGDKLSADGYTGRYDYVMKDLMSITNGGSGANEGVANDNEDDENQSDSPIPKKIKLDGGAMLAVGTASLKECHLCSAVFNNNIGLSNHMRTHTTGEGGVEEEIPEEEDDTPDKKPIDPLFKRSLELAADRRFRRMRCRICQKRFSSKKSYRRHMLIDHQIRNVQFIKCKLCNAEFAYEKGLKVHMFKIHNTLLKDEMIVKQYECDICSIVYRTEEQLLLHKKTVHGNESAQADDELPQSMDQSMESSAPLFWYQCRYCPSNFNTNKKLAIHINSHYEFDSNDYSCKDCGNVYSGRKSLWVHRYKKHPPIADPSECSLCKKIFFDKQMLENHAQSCVKKSSTVGAGAASETEVSTFFQHKTGDDDDINDQQQETAANLMIKLPEVACTICAQKFTDQELFTKHIMMHERELYTDNPLAAMFDTGPADPNQFYLDRVNDNGEYVCDICTKAFAQMTALKVHRKWHFRGDSKQTPVDVNAPKTMKRKRELKCDYCPSTFISSNNLRRHIAELHKSEISNWPEPPKIEPEKYLQCSKCDLKFDAKKDWIEHKVNEAKIAKPFGPFQWGCEICGMYLSRREKLIHHMLAHIKETNGQLSVEGENYPGESNSQDSETSSHQEAIEQQRINEDGNEEEEEEEEEFDADEEEAEETVDTVNHDDNANDGQNEDETEQQSQLRQRLEHESNDDSNDSSDLSSDSDDTSSDEEEPEAPLPDEELKKRYACDLCQVYFGTSAELQKHVTSHFLNGPGSVTLTTITKDKPKPSEIHALDDDDDDDDDDDDLTETGAVDS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01254232;
- 90% Identity
- iTF_01223659;
- 80% Identity
- -