Xate017160.1
Basic Information
- Insect
- Xylophagus ater
- Gene Symbol
- -
- Assembly
- GCA_963422695.1
- Location
- OY730481.1:43050344-43051501[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 0.29 2.4e+03 -0.4 0.1 21 44 125 148 112 153 0.81 2 9 4.9e-06 0.041 14.9 0.4 21 48 153 180 150 184 0.87 3 9 3e-05 0.25 12.4 0.1 21 48 181 208 177 212 0.87 4 9 0.0076 63 4.7 0.1 21 48 209 236 206 240 0.86 5 9 0.00029 2.4 9.2 0.4 21 48 237 264 233 268 0.86 6 9 9.2e-05 0.76 10.8 0.1 21 48 265 292 263 296 0.87 7 9 0.018 1.5e+02 3.4 0.1 21 45 293 317 291 320 0.87 8 9 2.5e-05 0.21 12.6 0.3 21 51 321 351 317 353 0.87 9 9 0.27 2.3e+03 -0.3 0.1 22 45 350 373 347 381 0.71
Sequence Information
- Coding Sequence
- ATGGCAGAAATGAAAACGGATTTATTTGTCACAAAATGCCTGGAAGAAACCAAATCACCAGAATTTATCTTAACAgaagtttcaataaaacaagaacccgaattaattattgaagatgaattggaaaccgaaaaaatttgtaaatatttgcaaaaaaaccATGTGACTCAAGAGGATCGATTAAATTTGACTTGGCATAGTTGTGTGGTGTGTGAGGAACGATTCCTAAACACCGACGACTTAACACTGCATGCCCAAAATCATGAAGATCGTCAAAAGATGACGGATAAAATTATGGATTTCCAATGTACACAATGTAATAAGGTATTTGCTACGAAACCGAGCCGAAATATCCATCTTCGGATTCATACTGGTGAGAGaccattcaaatgcaatacttgcgatcgttcatttataCGAAATAGGGATCTTCAATTACATATGATAgcacatactggggagaaaccatttaaatgcccgAGTTGTGATTGTTCATTTGCACGAAGTGCTAATCTGCGAAGACATATAAGAATacatactggtgagaaaccatttaaatgcccgAGTTGTGATAGTTCATTTGCACGAAGTGCTGATCTGCGAAGACATATAAGAatacatactggggagaaaccatttaaatgcccgAGTTGCGATTGTTCATTTGCACAAAGGAGTGGTCTTCAGAACCATATGAGGATTcatactggtgagaaaccatttaaatgcccgAGTTGCGATTGTTCATTTGCACGAAATGCTGATCTGCGAAGACATATAAGAatacatactggggagaaaccatttaaatgcccgAGTTGCGATTGTTCATTTGCAGATAGTAATGTTCTGCGAAGACATATAAGAatacatactggggagaaaccatttaaatgcccgagttgcgatagttcatttgcaCGAAGTAGTGTTCTTCAAGCTCATATGAGAATTcatactggtgagaaaccatttGAATGCCCGagatgcgatagttcatttgcaCGAAGTGCTAATCTGCGAAAGCATATCAGAATACATACTGGGGAgaagccatttaaatgcaacCATTGTGGTCGTTCATTTGCAGTAAATCAAAGTCTTCAGAGGCATATGAGGACTCATACTGGtgtaaaactatttaaatgcGGCCACTGA
- Protein Sequence
- MAEMKTDLFVTKCLEETKSPEFILTEVSIKQEPELIIEDELETEKICKYLQKNHVTQEDRLNLTWHSCVVCEERFLNTDDLTLHAQNHEDRQKMTDKIMDFQCTQCNKVFATKPSRNIHLRIHTGERPFKCNTCDRSFIRNRDLQLHMIAHTGEKPFKCPSCDCSFARSANLRRHIRIHTGEKPFKCPSCDSSFARSADLRRHIRIHTGEKPFKCPSCDCSFAQRSGLQNHMRIHTGEKPFKCPSCDCSFARNADLRRHIRIHTGEKPFKCPSCDCSFADSNVLRRHIRIHTGEKPFKCPSCDSSFARSSVLQAHMRIHTGEKPFECPRCDSSFARSANLRKHIRIHTGEKPFKCNHCGRSFAVNQSLQRHMRTHTGVKLFKCGH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01540677;
- 90% Identity
- iTF_01540677;
- 80% Identity
- iTF_01540677;