Xate025070.1
Basic Information
- Insect
- Xylophagus ater
- Gene Symbol
- Hr39
- Assembly
- GCA_963422695.1
- Location
- OY730484.1:13060910-13065996[-]
Transcription Factor Domain
- TF Family
- SF-like
- Domain
- zf-C4|SF-like
- PFAM
- AnimalTFDB
- TF Group
- Zinc-Coordinating Group
- Description
- The ligand binding domain of nuclear receptor steroidogenic factor 1 (SF-1): SF-1, a member of the nuclear hormone receptor superfamily, is an essential regulator of endocrine development and function and is considered a master regulator of reproduction. Most nuclear receptors function as homodimer or heterodimers, however SF-1 binds to its target genes as a monomer, recognizing the variations of the DNA sequence motif, T/CCA AGGTCA. SF-1 functions cooperatively with other transcription factors to modulate gene expression. Phospholipids have been determined as potential ligands of SF-1. Like other members of the nuclear receptor (NR) superfamily of ligand-activated transcription factors, SF-1 has a central well conserved DNA binding domain (DBD), a variable N-terminal domain, a flexible hinge and a C-terminal ligand binding domain (LBD). [1, 8, 3, 11, 6, 5, 12, 10, 9, 2, 4, 7]
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 5 0.41 6.8e+03 -3.0 3.6 145 170 42 69 9 151 0.50 2 5 0.17 2.8e+03 -1.8 7.8 79 153 180 251 133 273 0.73 3 5 2 3.3e+04 -22.7 32.1 34 111 197 364 188 450 0.48 4 5 9.7e-14 1.6e-09 38.6 2.1 1 168 535 684 535 690 0.69 5 5 1.1e-77 1.8e-73 249.2 0.9 200 408 679 880 673 880 0.97
Sequence Information
- Coding Sequence
- ATGTCATCTTCTGGTGGAAATTTATCTGCTGGTAATAGTggcaacagcaacagcagcaacaacacCACGATCGCAAATCAATCGAATATTAATAATGTCGCAATGATTAGTACCAATTGTAATTTACTATCATCTACGACATCTCTATCaacatcattatcatcattatcgACATCAACAATACGAAATCGAAATAGTAATGTATCTGTGACGAATATAAAATGTGAAAATGATATAATACCACAGCATTCATCGccatcatcaacatcaacatCGACAACAATAATACAAACAGCGACGACAACAAATGGTGATATTccaataacaaataataataataataatagtttttttaatGGCGGCAGTATTCGTATATCAGTACCAAAAGTTGAAGATTCTGATGAATCTGAATCAGAATTATcaataattgaaaattcaaaagtTAATCGTCGTCTAAATAcgacaataaataaaaatggtcCAAGACCAATGTCATGGGAGGGTGAATTATCAGAAACTGATGATTTAATGGATATCGAAAATTCAGTTAGTAATGATAAACAATTTATTGATGATTCACAAAtgtcaacaacaacaaaagatGATTTACAACATAATCATCATCAACAGCAACACCAtcagcagcagcagcaacacCAACAACATCATCAACATAATGATATAACAATTAAAAATGACTATGAACAAATTACATCAACAGAAATTGGTAGCTCAATTATTTATACATCTGGTATGCAAAAGaaatataatgaaataattaatttaaaacatgaAATTGATGGTGCAATAACGACAACAACAACATCTTCACCATCATCATCTACAACAACACCAACACCTACCAGTTTAACTGGAAATAATAGTGGTGGTGCAAATTGTGGTGGTGGTGGACTAAATTCTCCATTATTAAATCGTTCAAAAACAACAAATCTATTACCAGCTAATCCAAGTCCTGATTCAGCAATTCATTCCGTTTATACACATAGTTCACCAAGTCAATCACCATTAACATCACGTCATGCACCATATACACCATCATTAAGTCGTAACAATTCTGATGCATCTCATAGTAGCTGTTATTCATATAGTTCTGAATTTAGTCCAACACATTCACCAATTCAAGGACGTCATAATATTTATGGAAACTATAATGGTTCATCACTACATCATTCCGTATTATATCGACCAATTTTAGATAGTACTAGTAGTAATAATGATCAACAATCATCGTCATCATCTTcatcaataaataatttaaatcaacaACAGCCAACACAGCAACAACAACGACGTAGTGATGATCTTTTATTATCAGATAATAATGATACAATACCATCGGCTGGTATATCAAGACAACAATTAATAAATAGTCCATGTCCAATATGTGGTGATAAAATATCTGGTTTTCATTATGGTATATTTTCATGTGAATCCTGTAAAGGTTTCTTTAAGCGAACAGTTCAAAATCGTAAAAATTATGTTTGTGTACGTGGTGGTCCATGTCCTGTTACAATATCAACACGTAAAAAATGTCCAGCATGTAGATTTGATAAGTGTTTACAAAAAGGCATGAAACTAGAAGCAATACGTGAAGATCGTACACGTGGCGGTCGTTCAACATATCAATGTTCTTATACATTaccaaattcattattaaatccGATTATGAATAATTCAGATAATAATGGTGGTAATAATGGGCAACAAATGAATAATCAAAGGACAACATTAAATGGTTGTATTATTAAATCCGAACAAGATTTAAGTAATGGCAGTAGTAGTTGTAGTAATAATATGGGatcaaatcatcatcatcatcatcggaATACAATTCCAACTCTATTACAAGAAATTATGGACGTAGAACATCTTTGGCAAtacaatgaaaatgaaatatcaCGATTAAATCAAGCGACATCTTCTTCATCATTGTCGACACCAAATCCATCAACAAATCCACTTTTAGCAAGTGCTGGGATTTCGTCAGCTTCATCAACATCATCTTTATCATCATCAAATGGTGAAAATACAAATCCAGATTTAATAGCAAATCTATGCAATGTTGCCGATCATCGTTTATACAAAATAGTTAAATGGTGTAAAAGTTTGCCAttatttaaacatatttcgatCGATGATCAAATATGTTTATTGATTAATTCATGGTGTGAACTTTTATTATTCTCTTGTTGCTTTCGTTCGATAGCTACACCTGGAGAGATTAAGATATCATTAGGTAAATCAATAACGCTTGCTCAAGCCAAGTCTAATGGTTTGCaggCATGCATTGAAAGAATGCTGAACCTGACAGATCATTTGAGACGATTGCGTGTTGATCGTTATGAATATGTTGCCATGAAAGTTATTGTTCTTCTGCAATCCgATACTTCGGAATTACGAGAACCAGTCAAAGTTCGTGAAAGTCAAGAGAAAGCATTACAAGCTTTACAAGCTTACACTTTGGCTCATTATCCAGAGTCACCAGCGAAATTTGGTGAACTTTTATTACGTATTCCTGAACTTCAAAGAACATGTcaacTGGGTAAAGAAATGTTAACTATTAAATCAAAAGATGGTgaagattttaatttattaatggaATTACTACGTGGAGAACATTGA
- Protein Sequence
- MSSSGGNLSAGNSGNSNSSNNTTIANQSNINNVAMISTNCNLLSSTTSLSTSLSSLSTSTIRNRNSNVSVTNIKCENDIIPQHSSPSSTSTSTTIIQTATTTNGDIPITNNNNNNSFFNGGSIRISVPKVEDSDESESELSIIENSKVNRRLNTTINKNGPRPMSWEGELSETDDLMDIENSVSNDKQFIDDSQMSTTTKDDLQHNHHQQQHHQQQQQHQQHHQHNDITIKNDYEQITSTEIGSSIIYTSGMQKKYNEIINLKHEIDGAITTTTTSSPSSSTTTPTPTSLTGNNSGGANCGGGGLNSPLLNRSKTTNLLPANPSPDSAIHSVYTHSSPSQSPLTSRHAPYTPSLSRNNSDASHSSCYSYSSEFSPTHSPIQGRHNIYGNYNGSSLHHSVLYRPILDSTSSNNDQQSSSSSSSINNLNQQQPTQQQQRRSDDLLLSDNNDTIPSAGISRQQLINSPCPICGDKISGFHYGIFSCESCKGFFKRTVQNRKNYVCVRGGPCPVTISTRKKCPACRFDKCLQKGMKLEAIREDRTRGGRSTYQCSYTLPNSLLNPIMNNSDNNGGNNGQQMNNQRTTLNGCIIKSEQDLSNGSSSCSNNMGSNHHHHHRNTIPTLLQEIMDVEHLWQYNENEISRLNQATSSSSLSTPNPSTNPLLASAGISSASSTSSLSSSNGENTNPDLIANLCNVADHRLYKIVKWCKSLPLFKHISIDDQICLLINSWCELLLFSCCFRSIATPGEIKISLGKSITLAQAKSNGLQACIERMLNLTDHLRRLRVDRYEYVAMKVIVLLQSDTSELREPVKVRESQEKALQALQAYTLAHYPESPAKFGELLLRIPELQRTCQLGKEMLTIKSKDGEDFNLLMELLRGEH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01540422;
- 90% Identity
- iTF_01540422;
- 80% Identity
- iTF_01540422;