Xate000763.1
Basic Information
- Insect
- Xylophagus ater
- Gene Symbol
- Lrrfip2
- Assembly
- GCA_963422695.1
- Location
- OY730478.1:2616625-2622161[+]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 0.15 5.1e+03 -2.7 2.5 135 208 58 129 30 148 0.54 2 3 4.5e-113 1.5e-108 363.5 32.9 1 299 191 475 191 476 0.91 3 3 0.074 2.4e+03 -1.6 3.4 224 244 508 528 480 550 0.46
Sequence Information
- Coding Sequence
- atggaTGAAACTAAAAGTTGTGATACTAATTCAAatagtaatattattaataataataatattactaaTAATGTGATTAATAAATCAAATGATATAAATAATGATGAAGATCCGGCAGAAGAAGAATTTGATTTTAGTGATGATGATTTTAAAGATTCCGAAAATGaagataatataattaaaaatgataatcAAATTTCGATTagtactaataataatattaataataatataaatagtaATAAAGATGTTTgtgatattaataaaaagacaatcgaatcaaatgaaatcttaataaataataataataataataataatgaagatgatgataatgatgatcaTTTTGTAACATGCAATGGAGATATATCATCAGTTTCAACAGATGATATCGataattcaaataagaaatatgaaacacttaatattgatttaataaataaacaaaatagtgCGAAAACTGATGATTTGAATTGTTGTAATAAAAATGATGACCATGATGATGATGTATTCTATAGTGATCAAGAAGATGAGCTCATTGTAAACTTTTTGGGAAAAGCTAATGATATTgCGGAAGCAAGACTGGCAGCTCGTCGTCAAGCACGTGCAGAAGCTCGCGAAATACGTATGCGTGAACTGGAACGTCAACAAAGGGAACAAGAACAAAATGCTGATAGAGTTTTCGATATGCAGACAGCAGCCGGAATTGATCCTTTATCTAGATCTCGTATTACATTATCAACTGGTTCTGCACGAGGTAATTCAATGTCATCGAGAAGAAGTAGCGAAGACTCTCTGGAAGAAGAAGGAAGAAGTTTACGTGATATTAGACATGAACTCaaggACGTCGAAGAAAGATTTCGAAAAGCAATGATAGCTAATGCCCAATTAGATAATGAAAGAGCCTCACAATCTTATCAAATACAATTGCTTAAGGATAAACTAGAAGAAATGGAAGAATCATATTCACAATTACAACGTGAATATAAAGAGAAATGTCGTGATCATAATGCGTTAAAGCgtaattttgataaattagATGAAGAATTAAAATTGGTACGGGGGCAATTAGATGAAAGAGATACTCTTATCACTGAACAAGGTTTAGTTATAGTATTGATCGAGAATGATGATGGCTCAGATGCCAAACGTGCACTAGTCAGTATGGAAAACGCACAACTATTAGGTTCCGTACAAGGTTCATTAGatgttcgacttaaaaaattcgccgaagaaaaacaacaactcCAAAAAGATGTCCAAAGTCTACAACAGCAATTGTCTGATATTAAATCACAAGGACGACGAGGAAGTACTATGAATGGTCCATTAGGaaatgatgatgattatgaAGCGCAAAGAGAAGCAAACAAAATCATAGCtgattataaatataaattacaaaaagcTGAACAAGAAATCGCTAGTCTTCAAGCTAGTTTAGCAAGATCAGAAACACAAGTAATACGATATAAAAGTACTGCTGAAGCGGCTGAAAAGGCTGAAGctgatttaaaaattgaaagaagaaaattgcaaAGAGagAATCGTGAAGCAATGGAACGCTTAGAAGAATTAGAAACAGCCAATAATCATCTATTAAAACGCTTAGATAAACTTAAGAATGCTAAAAGTGCATTACTAAAGGACCTCTGA
- Protein Sequence
- MDETKSCDTNSNSNIINNNNITNNVINKSNDINNDEDPAEEEFDFSDDDFKDSENEDNIIKNDNQISISTNNNINNNINSNKDVCDINKKTIESNEILINNNNNNNNEDDDNDDHFVTCNGDISSVSTDDIDNSNKKYETLNIDLINKQNSAKTDDLNCCNKNDDHDDDVFYSDQEDELIVNFLGKANDIAEARLAARRQARAEAREIRMRELERQQREQEQNADRVFDMQTAAGIDPLSRSRITLSTGSARGNSMSSRRSSEDSLEEEGRSLRDIRHELKDVEERFRKAMIANAQLDNERASQSYQIQLLKDKLEEMEESYSQLQREYKEKCRDHNALKRNFDKLDEELKLVRGQLDERDTLITEQGLVIVLIENDDGSDAKRALVSMENAQLLGSVQGSLDVRLKKFAEEKQQLQKDVQSLQQQLSDIKSQGRRGSTMNGPLGNDDDYEAQREANKIIADYKYKLQKAEQEIASLQASLARSETQVIRYKSTAEAAEKAEADLKIERRKLQRENREAMERLEELETANNHLLKRLDKLKNAKSALLKDL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -